Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B09
(250 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 100 1e-21
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 100 1e-21
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 100 1e-21
sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (R... 100 1e-21
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab... 98 7e-21
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 97 1e-20
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 97 1e-20
sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta (R... 97 1e-20
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 97 1e-20
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 97 1e-20
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 100 bits (248), Expect = 1e-21
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +S+ H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+V++TVETK P +
Sbjct: 343 VAAQGKYIAIVSTTVETKEPEK 364
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 100 bits (248), Expect = 1e-21
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +S+ H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+V++TVETK P +
Sbjct: 343 VAAQGKYIAIVSTTVETKEPEK 364
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 100 bits (248), Expect = 1e-21
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +S+ H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+V++TVETK P +
Sbjct: 343 VAAQGKYIAIVSTTVETKEPEK 364
>sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 100 bits (248), Expect = 1e-21
Identities = 47/82 (57%), Positives = 60/82 (73%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +S+ H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+V++TVETK P +
Sbjct: 343 VAAQGKYIAIVSTTVETKEPEK 364
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 97.8 bits (242), Expect = 7e-21
Identities = 47/82 (57%), Positives = 58/82 (70%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NTS A S QII P QVNR DIYVC +S H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+ ++TVETK P +
Sbjct: 343 VAAQGKYIAIASTTVETKEPEK 364
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 97.1 bits (240), Expect = 1e-20
Identities = 45/82 (54%), Positives = 59/82 (71%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YV D+V+K+G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +SY H+
Sbjct: 283 DPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+ ++TVET +P +
Sbjct: 343 VAAQGKYIAIASTTVETTDPEK 364
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 96.7 bits (239), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP Y+ D+V+K+G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +SY H+
Sbjct: 283 DPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+ ++TVET +P +
Sbjct: 343 VAAQGKYIAIASTTVETTDPEK 364
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 96.7 bits (239), Expect = 1e-20
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP YVKD+V+K G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +S H+
Sbjct: 283 DPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+V++T ETK P +
Sbjct: 343 VAAQGKYIAIVSTTAETKEPEK 364
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 96.7 bits (239), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP Y+ D+V+K+G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +SY H+
Sbjct: 283 DPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+ ++TVET +P +
Sbjct: 343 VAAQGKYIAIASTTVETTDPEK 364
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 96.7 bits (239), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +3
Query: 3 DPGYVKDKVKKSGSVIRAICILTHPAPNTSGAVSTQIIFPHIQVNRTHDIYVCCVSYTHS 182
DP Y+ D+V+K+G VIR ICIL+HP NT+ A S QII P QVNR DIYVC +SY H+
Sbjct: 283 DPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHN 342
Query: 183 GASHPNFIALVASTVETKNpre 248
A+ +IA+ ++TVET +P +
Sbjct: 343 VAAQGKYIAIASTTVETTDPEK 364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,868,816
Number of Sequences: 369166
Number of extensions: 623422
Number of successful extensions: 1802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)