Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B02
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88799|ZAN_MOUSE Zonadhesin precursor 37 0.072
sp|O24339|CATA_SOLAP Catalase 34 0.36
sp|P49317|CATA3_NICPL Catalase isozyme 3 32 2.3
sp|P29435|GYRB_BUCAP DNA gyrase subunit B 31 3.0
sp|O13547|CCW14_YEAST Covalently-linked cell wall protein 1... 30 5.1
sp|O48560|CATA3_SOYBN Catalase-3 30 5.1
sp|Q09712|YA35_SCHPO Hypothetical protein C18B11.05 in chro... 30 6.7
sp|Q96528|CATA1_ARATH Catalase-1 30 6.7
sp|Q875M2|AKR1_KLULA Palmitoyltransferase AKR1 (Ankyrin rep... 30 6.7
sp|Q56732|DHAS_SHESP Aspartate-semialdehyde dehydrogenase (... 30 6.7
>sp|O88799|ZAN_MOUSE Zonadhesin precursor
Length = 5376
Score = 36.6 bits (83), Expect = 0.072
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = +3
Query: 156 SRCFECINICCDAEDGKAKEFSFNFNETCKNNCLKFPFQL--NDQSITATACSRSDEMCF 329
S+C C DG + S TC+ C+ P + ND+ + ++ C C
Sbjct: 4511 SKCLPPCQPSCSDPDGHCEGTSPEAPSTCEEGCVCEPDYVLSNDKCVPSSECG-----CK 4565
Query: 330 TAHGIIKYKVKSDDSVFTVNYVQRGCSQSCPVEVCDFAKINECNFS-PEISKYLEN 494
AHG++ + K+ +V RGC+++C C + +FS P S+ L+N
Sbjct: 4566 DAHGVLIPESKT--------WVSRGCTKNC---TCKGGTVQCHDFSCPTGSRCLDN 4610
Score = 33.1 bits (74), Expect = 0.79
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Frame = +3
Query: 153 NSRCFECINIC---CDAEDGKAKEFSFNFNETCKNNCLKFPFQL--NDQSITATACSRSD 317
+S+ +C+ C C DG + S N + CK C+ P + ND+ + C
Sbjct: 2463 HSKFTDCLPPCHPSCSDPDGHCEGISTNAHSNCKEGCVCQPGYVLRNDKCVLRIECGCQH 2522
Query: 318 EMCFTAHGIIKYKVKSDDSVFTVNYVQRGCSQSC 419
T G I N+ RGCSQSC
Sbjct: 2523 ----TQGGFIPAGK---------NWTSRGCSQSC 2543
Score = 33.1 bits (74), Expect = 0.79
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = +3
Query: 156 SRCFECINICCDAEDGKAKEFSFNFNETCKNNCLKFPFQL--NDQSITATACSRSDEMCF 329
+ C + C DG + S TCK C+ P + ND+ + C C
Sbjct: 2707 THCLPSCLLSCSDPDGLCRGTSPEAPSTCKEGCVCDPDYVLSNDKCVLRIECG-----CK 2761
Query: 330 TAHGIIKYKVKSDDSVFTVNYVQRGCSQSC 419
A G++ K+ ++ RGC+QSC
Sbjct: 2762 DAQGVLIPAGKT--------WINRGCTQSC 2783
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 171 CINICCDAEDGKAKEFSFNFNETCKNNCL-KFPFQL-NDQSITATACSRSDEMCFTAHGI 344
C+ C D DG K S TCK C+ + + L N++ + C C AHG
Sbjct: 3550 CLPSCLDP-DGLCKGASPKVPSTCKEGCICQSGYVLSNNKCLLRNRCG-----CKDAHGA 3603
Query: 345 IKYKVKSDDSVFTVNYVQRGCSQSC 419
+ + K+ +V RGC+QSC
Sbjct: 3604 LIPEDKT--------WVSRGCTQSC 3620
Score = 31.2 bits (69), Expect = 3.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Frame = +3
Query: 153 NSRCFECINIC---CDAEDGKAKEFSFNFNETCKNNCLKFP--FQLNDQSITATACSRSD 317
+S C+ C C DG + S CK C+ P LN++ + C
Sbjct: 2823 HSHYTNCLPTCQPSCSDPDGHCEGSSTKAPSACKEGCVCEPDYVMLNNKCVPRIECG--- 2879
Query: 318 EMCFTAHGIIKYKVKSDDSVFTVNYVQRGCSQSC 419
C G++ + +D + ++ RGC+QSC
Sbjct: 2880 --CKDTQGVL---IPADKT-----WINRGCTQSC 2903
Score = 30.4 bits (67), Expect = 5.1
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
Frame = +3
Query: 135 TFCEGNN------------SRCFECINIC---CDAEDGKAKEFSFNFNETCKNNCLKFP- 266
T+C NN S C+ C C DG ++ S TCK CL P
Sbjct: 3878 TYCNHNNNCAKIPLQCPAHSHFTSCLPSCPPSCANLDGSCEQTSPKVPSTCKEGCLCQPG 3937
Query: 267 -FQLNDQSITATACSRSDEMCFTAHGIIKYKVKSDDSVFTVNYVQRGCSQSCPVEVCDFA 443
F N + + T C C A G + K+ + + C+QSC C
Sbjct: 3938 YFLNNGKCVLQTHCD-----CKDAEGGLVPAGKT--------WTSKDCTQSC---ACTGG 3981
Query: 444 KINECNFSPEISKYLENKINTEKN 515
+ NF + Y ++ + N
Sbjct: 3982 AVQCQNFQCPLGTYCKDSGDGSSN 4005
>sp|O24339|CATA_SOLAP Catalase
Length = 492
Score = 34.3 bits (77), Expect = 0.36
Identities = 29/98 (29%), Positives = 44/98 (44%)
Frame = +3
Query: 21 NHIQEHLYVLITFSKH*K*NSEMSFLYIFSYFLVHQLVTFCEGNNSRCFECINICCDAED 200
+HIQE+ +L FS H + S F ++F V Q EG+ + IN +
Sbjct: 164 SHIQENWRILDFFSHHPE--SLHMFTFLFDDLGVPQDYRHMEGSGVNTYTLIN-----KA 216
Query: 201 GKAKEFSFNFNETCKNNCLKFPFQLNDQSITATACSRS 314
GKA+ F++ TC CL L D++I + S
Sbjct: 217 GKAQYVKFHWKPTCGVKCL-----LEDEAIKVGGANHS 249
>sp|P49317|CATA3_NICPL Catalase isozyme 3
Length = 492
Score = 31.6 bits (70), Expect = 2.3
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +3
Query: 21 NHIQEHLYVLITFSKH*K*NSEMSFLYIFSYFLVHQLVTFCEGNNSRCFECINICCDAED 200
+HIQE+ +L FS H + S F ++F V Q EG+ + IN +
Sbjct: 164 SHIQENWRILDFFSHHPE--SLHMFSFLFDDLGVPQDYRHMEGSGVNTYMLIN-----KA 216
Query: 201 GKAKEFSFNFNETCKNNCL 257
GKA F++ TC CL
Sbjct: 217 GKAHYVKFHWKPTCGVKCL 235
>sp|P29435|GYRB_BUCAP DNA gyrase subunit B
Length = 803
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 247 FLQVSLKLKLNSFAFPSSASQQILMHSKHLELFPSQKVTSWCTKKYEKIYKK 92
F + +K+K N FP +++ H + L V +W K EK+ KK
Sbjct: 588 FNHIQIKMKKNKNYFPELILNELIYHPRLYNLKNENVVQNWIEKLVEKLNKK 639
>sp|O13547|CCW14_YEAST Covalently-linked cell wall protein 14 precursor (Inner cell wall
protein)
Length = 238
Score = 30.4 bits (67), Expect = 5.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 120 VHQLVTFCEGNNSRCFECINICCDAEDGKAKEFSFNFNETCKNNCLKFPFQLNDQSITAT 299
++Q+ +CE NS +C++ C D A +F K++C + L D S +A+
Sbjct: 45 LNQVTCYCEHENSAVKKCLDSICPNNDADAAYSAF------KSSCSEQNASLGDSSSSAS 98
Query: 300 ACSRS 314
+ + S
Sbjct: 99 SSASS 103
>sp|O48560|CATA3_SOYBN Catalase-3
Length = 492
Score = 30.4 bits (67), Expect = 5.1
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +3
Query: 21 NHIQEHLYVLITFSKH*K*NSEMSFLYIFSYFLVHQLVTFCEGNNSRCFECINICCDAED 200
+HIQE+ +L FS H + S F ++F + Q +G + IN +
Sbjct: 164 SHIQENWRILDFFSHHPE--SLHMFSFLFDDVGIPQDYRHMDGFGVNTYTLIN-----KA 216
Query: 201 GKAKEFSFNFNETCKNNCLKFPFQLNDQSITATACSRS 314
GKA F++ TC CL L+D++I + S
Sbjct: 217 GKAVYVKFHWKTTCGEKCL-----LDDEAIRVGGSNHS 249
>sp|Q09712|YA35_SCHPO Hypothetical protein C18B11.05 in chromosome I
Length = 426
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 628 SLTVLQPSPLQHLISPPIPKFITFSSPPKLSYTFFIKLFFSVLILFSKYLLISGEKLHSF 449
SL ++ P+ + + ++ T ++ P F L + ILF+ + ISG LHSF
Sbjct: 290 SLPLIYPAVQEKYWNVGFLRYWTLNNIPN----FLFALLSIIPILFALFYSISGSTLHSF 345
Query: 448 ILAKSH 431
KSH
Sbjct: 346 RSIKSH 351
>sp|Q96528|CATA1_ARATH Catalase-1
Length = 492
Score = 30.0 bits (66), Expect = 6.7
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +3
Query: 21 NHIQEHLYVLITFSKH*K*NSEMSFLYIFSYFLVHQLVTFCEGNNSRCFECINICCDAED 200
+HIQE+ +L FS H + S F ++F + Q EG + IN +
Sbjct: 164 SHIQENWRILDFFSHHPE--SLHMFSFLFDDLGIPQDYRHMEGAGVNTYMLIN-----KA 216
Query: 201 GKAKEFSFNFNETCKNNCL 257
GKA F++ TC CL
Sbjct: 217 GKAHYVKFHWKPTCGIKCL 235
>sp|Q875M2|AKR1_KLULA Palmitoyltransferase AKR1 (Ankyrin repeat-containing protein AKR1)
Length = 752
Score = 30.0 bits (66), Expect = 6.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = -1
Query: 604 PLQHLISPPIPKFITFSSP----PKLSY-----TFFIKLFFSVLILFSKYLLISGEKLHS 452
PL S K +TF P P + Y TFFI L + ++L L++S + S
Sbjct: 310 PLPQYFSASTGKMLTFFLPWVLIPLVFYIFSKITFFIALLINTIVLVISGLVLSRLVVPS 369
Query: 451 FILAKSH 431
++L+K H
Sbjct: 370 YLLSKRH 376
>sp|Q56732|DHAS_SHESP Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH)
Length = 338
Score = 30.0 bits (66), Expect = 6.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 411 QSCPVEVCDFAKINECNFSPEISKYLENKINTEKNNLIKKVYESFGGEENVIN 569
Q P+E ++K N P+I ++EN E+ ++ + + FG + V+N
Sbjct: 181 QGLPIEPKVYSKQIAFNVLPQIDTFMENGYTKEEMKMVWETQKIFGDDNIVVN 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,637,473
Number of Sequences: 369166
Number of extensions: 1514533
Number of successful extensions: 4209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4205
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)