Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_A17-1
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6UXA7|CF015_HUMAN Protein C6orf15 precursor (STG protein) 54 3e-07
sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 ... 46 7e-05
sp|Q9BGL9|CF015_MACMU Protein C6orf15 homolog precursor (rm... 45 1e-04
sp|P02849|BAR1_CHITE BALBIANI RING PROTEIN 1 (GIANT SECRETO... 41 0.003
sp|Q9NYV4|CD2L7_HUMAN Cell division cycle 2-related protein... 39 0.011
sp|P10552|FMRF_DROME FMRFamide-related peptides precursor [... 39 0.014
sp|Q8TF01|SFR17_HUMAN Splicing factor, arginine/serine-rich... 37 0.040
sp|P50770|VE2_HPV24 Regulatory protein E2 35 0.15
sp|P83183|HSPC_ELECI Cysteine-rich protamine 35 0.20
sp|P30640|YNE1_CAEEL Hypothetical protein R08D7.1 in chromo... 34 0.26
>sp|Q6UXA7|CF015_HUMAN Protein C6orf15 precursor (STG protein)
Length = 325
Score = 53.9 bits (128), Expect = 3e-07
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = +2
Query: 92 RRIKRTPSYSWRRNTMTPSYSW-IRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSW-RRI 265
RR+ R+ S ++ W + + + P + W T+ PS SW P W R
Sbjct: 176 RRLPRSNSLGAGGKILSQRPPWSLIHRVLPDHPW--GTLNPSVSWGGGG--PGTGWGTRP 231
Query: 266 KRTPSYSWKRNTMTPSYSWRRIKRTPSYSWRRITMTPSDSWRRITMTPSDSWRRITMTP 442
P W N P SW I R P SW I P SW I P SW I + P
Sbjct: 232 MPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYP 290
Score = 48.1 bits (113), Expect = 2e-05
Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Frame = +2
Query: 209 PSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMT-PSYSWRRIKRTPSYSWRRITMTPSDS 385
P + W T+ PS SW P W M P W + P SW I P S
Sbjct: 205 PDHPW--GTLNPSVSWGG--GGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGS 260
Query: 386 WRRITMTPSDSWRRITMTPSDSWRRITMTP 475
W I P SW I P SW I + P
Sbjct: 261 WGNINRYPGGSWGNINRYPGGSWGNIHLYP 290
Score = 43.9 bits (102), Expect = 3e-04
Identities = 28/89 (31%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Frame = +2
Query: 254 WRRIKRT-PSYSWKRNTMTPSYSW----------RRIKRTPSYSWRRITMTPSDSWRRIT 400
W I R P + W T+ PS SW R P W P SW I
Sbjct: 197 WSLIHRVLPDHPW--GTLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNIN 254
Query: 401 MTPSDSWRRITMTPSDSWRRITMTPSDSW 487
P SW I P SW I P SW
Sbjct: 255 RYPGGSWGNINRYPGGSWGNINRYPGGSW 283
Score = 40.0 bits (92), Expect = 0.005
Identities = 33/122 (27%), Positives = 38/122 (31%), Gaps = 15/122 (12%)
Frame = +2
Query: 2 TMTPSYSW----------RRIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSY 151
T+ PS SW R P W N P SW I R P SW P
Sbjct: 211 TLNPSVSWGGGGPGTGWGTRPMPHPEGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGG 270
Query: 152 SWIRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRTPSYSWK-----RNTMTPSY 316
SW P SW + P + N P + R P SW N +P
Sbjct: 271 SWGNINRYPGGSWGNIHLYPGIN---NPFPPG-----VLRPPGSSWNIPAGFPNPPSPRL 322
Query: 317 SW 322
W
Sbjct: 323 QW 324
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 (DRB sensitivity-inducing factor
large subunit) (DSIF large subunit)
Length = 1208
Score = 46.2 bits (108), Expect = 7e-05
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Frame = +2
Query: 8 TPSYSWRRIKRTPSYSWRRNTMTPSYSWRRIK------RTPSYSWRRNTMTPSYSWI--- 160
TP Y +TP Y +MTP+Y R RTP+Y + TP+Y +
Sbjct: 815 TPMYG----AQTPMYG----SMTPAYDGGRTPAYGEGGRTPAYG----SKTPAYGDLDEH 862
Query: 161 RNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMTPSYSWRRIKRT 340
++ TP+Y ++ TP+Y TP+Y RTP+Y N+ TP+Y RT
Sbjct: 863 SSSRTPAYG-NDSSRTPAYGSADGARTPAYGSTEGGRTPAYGSMDNSRTPAYD--DSGRT 919
Query: 341 PSY 349
P Y
Sbjct: 920 PGY 922
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +2
Query: 8 TPSYSWRRIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSYSWIRNTMTPSYS 187
TP+Y RTP+Y TP+Y RTP+Y N+ TP+Y + TP Y
Sbjct: 867 TPAYG-NDSSRTPAYGSADGARTPAYGSTEGGRTPAYGSMDNSRTPAYD--DSGRTPGYE 923
Query: 188 WRRNTMTPSYSWRRNTMTPSY-SWRRIKRTPSYS 286
+ TP+Y ++ TP+Y RTP+Y+
Sbjct: 924 -SMPSRTPNYD--SSSKTPAYPESEHSARTPAYN 954
Score = 39.3 bits (90), Expect = 0.008
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Frame = +2
Query: 8 TPSYSWRRIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSYSWIRNTMTPSYS 187
TP Y +TP Y TP Y TP+Y R TP+Y TP+Y
Sbjct: 808 TPMYG----SKTPMYG----AQTPMYG----SMTPAYDGGR---TPAYG--EGGRTPAYG 850
Query: 188 WRRNTMTPSYS---WRRNTMTPSYSWRRIKRTPSYSWKRNTMTPSYSWRRIKRTPSYSWR 358
+ TP+Y ++ TP+Y RTP+Y TP+Y RTP+Y
Sbjct: 851 ----SKTPAYGDLDEHSSSRTPAYG-NDSSRTPAYGSADGARTPAYGSTEGGRTPAYGSM 905
Query: 359 RITMTPS 379
+ TP+
Sbjct: 906 DNSRTPA 912
>sp|Q9BGL9|CF015_MACMU Protein C6orf15 homolog precursor (rmSTG)
Length = 314
Score = 45.1 bits (105), Expect = 1e-04
Identities = 30/90 (33%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 143 PSYSWIRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSW-RRIKRTPSYSWKRNTMTPSYS 319
P +S I + P + W T+ PS SW P W R P W N P S
Sbjct: 195 PPWSLIYRVL-PDHPW--GTLNPSVSWGGGG--PGTGWGTRPMPHPGGIWGINNQPPGTS 249
Query: 320 WRRIKRTPSYSWRRITMTPSDSWRRITMTP 409
W I R P SW I P SW I + P
Sbjct: 250 WGNINRYPGGSWGNINRYPGGSWGNIHLYP 279
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Frame = +2
Query: 209 PSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMT-PSYSWRRIKRTPSYSWRRITMTPSDS 385
P + W T+ PS SW P W M P W + P SW I P S
Sbjct: 205 PDHPW--GTLNPSVSWGG--GGPGTGWGTRPMPHPGGIWGINNQPPGTSWGNINRYPGGS 260
Query: 386 WRRITMTPSDSWRRITMTP 442
W I P SW I + P
Sbjct: 261 WGNINRYPGGSWGNIHLYP 279
Score = 38.5 bits (88), Expect = 0.014
Identities = 26/80 (32%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Frame = +2
Query: 254 WRRIKRT-PSYSWKRNTMTPSYSWRRIKRTPSYSWRRITMT-PSDSWRRITMTPSDSWRR 427
W I R P + W T+ PS SW P W M P W P SW
Sbjct: 197 WSLIYRVLPDHPW--GTLNPSVSWGG--GGPGTGWGTRPMPHPGGIWGINNQPPGTSWGN 252
Query: 428 ITMTPSDSWRRITMTPSDSW 487
I P SW I P SW
Sbjct: 253 INRYPGGSWGNINRYPGGSW 272
Score = 33.9 bits (76), Expect = 0.34
Identities = 31/119 (26%), Positives = 37/119 (31%), Gaps = 19/119 (15%)
Frame = +2
Query: 23 WRRIKRT-PSYSWRRNTMTPSYSW----------RRIKRTPSYSWRRNTMTPSYSWIRNT 169
W I R P + W T+ PS SW R P W N P SW
Sbjct: 197 WSLIYRVLPDHPW--GTLNPSVSWGGGGPGTGWGTRPMPHPGGIWGINNQPPGTSWGNIN 254
Query: 170 MTPSYSWRRNTMTPSYSWRRNTMTPSYS---WRRIKRTPSYSWKR-----NTMTPSYSW 322
P SW P SW + P + + R P SW N +P W
Sbjct: 255 RYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGVLRPPGSSWNTPAGFPNPPSPGLQW 313
Score = 33.5 bits (75), Expect = 0.44
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Frame = +2
Query: 2 TMTPSYSW----------RRIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSY 151
T+ PS SW R P W N P SW I R P SW P
Sbjct: 211 TLNPSVSWGGGGPGTGWGTRPMPHPGGIWGINNQPPGTSWGNINRYPGGSWGNINRYPGG 270
Query: 152 SW 157
SW
Sbjct: 271 SW 272
>sp|P02849|BAR1_CHITE BALBIANI RING PROTEIN 1 (GIANT SECRETORY PROTEIN I-A) (GSP-IA)
Length = 174
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/129 (27%), Positives = 53/129 (41%)
Frame = -1
Query: 493 SSPRIRRCHSDSSPRIRRCHRDSSPRIRRCHRDSSPRIRRCHRDSSPRIRGCSFDSSPRI 314
S PR + S PR + + S P+ + + S PR RC S+ R ++
Sbjct: 47 SKPRPEKPSKGSKPRPEKPSKGSKPKPEKPSKGSKPRPERC--GSAMR----KAEAEKCA 100
Query: 313 RRCHRVSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRVSSPRIRRCHRVSYPRIRRCHR 134
RR R + + R S R + S PR + + S PR + + S PR + +
Sbjct: 101 RRNGRFNASKCRCTSAGKPSRKSEPSKGSKPRPEKPSKESKPRPEKPSKGSKPRPEKPSK 160
Query: 133 VSSPRIRGC 107
S PR GC
Sbjct: 161 GSKPRPEGC 169
Score = 39.7 bits (91), Expect = 0.006
Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 1/146 (0%)
Frame = -1
Query: 475 RCHSDSSP-RIRRCHRDSSPRIRRCHRDSSPRIRRCHRDSSPRIRGCSFDSSPRIRRCHR 299
RC S P R + S PR + + S PR + + S P+ S S PR RC
Sbjct: 30 RCTSAGKPSRNSEPSKGSKPRPEKPSKGSKPRPEKPSKGSKPKPEKPSKGSKPRPERCGS 89
Query: 298 VSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRVSSPRIRRCHRVSYPRIRRCHRVSSPR 119
++ RR R ++ + R R + S PR + + S PR
Sbjct: 90 AM------RKAEAEKCARRNGRFNASKCRCTSAGKPSRKSEPSKGSKPRPEKPSKESKPR 143
Query: 118 IRGCSFDSSPRIRRCHRVSSPRIRGC 41
S S PR + + S PR GC
Sbjct: 144 PEKPSKGSKPRPEKPSKGSKPRPEGC 169
Score = 33.5 bits (75), Expect = 0.44
Identities = 40/151 (26%), Positives = 55/151 (36%), Gaps = 5/151 (3%)
Frame = -1
Query: 445 RRCHRDSSPRIRRCHRDSSPRIRRCHRDSSPRIRGCSFDSSPRIRRCHRVSFPRIRGCSF 266
RR R ++ + R R + S PR S S PR + + S P+ S
Sbjct: 19 RRNGRFNASKCRCTSAGKPSRNSEPSKGSKPRPEKPSKGSKPRPEKPSKGSKPKPEKPSK 78
Query: 265 DSSPRIRRCHRV-----SSPRIRRCHRVSSPRIRRCHRVSYPRIRRCHRVSSPRIRGCSF 101
S PR RC + RR R ++ + R R + S PR S
Sbjct: 79 GSKPRPERCGSAMRKAEAEKCARRNGRFNASKCRCTSAGKPSRKSEPSKGSKPRPEKPSK 138
Query: 100 DSSPRIRRCHRVSSPRIRGCSFDSSPRIRRC 8
+S PR + + S PR S S PR C
Sbjct: 139 ESKPRPEKPSKGSKPRPEKPSKGSKPRPEGC 169
>sp|Q9NYV4|CD2L7_HUMAN Cell division cycle 2-related protein kinase 7 (CDC2-related
protein kinase 7) (CrkRS)
Length = 1490
Score = 38.9 bits (89), Expect = 0.011
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 11/113 (9%)
Frame = +2
Query: 14 SYSWRRIKRTPSYSWRRNTMTPSY----SWRRIKRTPS-YSWRRNTMTPSYSWIRNTM-- 172
S ++ K++P + RR +++P Y +++ R+PS YS R+ +++P YS R++
Sbjct: 256 SSNYDSYKKSPGSTSRRQSVSPPYKEPSAYQSSTRSPSPYSRRQRSVSP-YSRRRSSSYE 314
Query: 173 -TPSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRTP---SYSWKRNTMTPSYS 319
+ SYS R +PS RR + +P S R + R+P S K + +P+YS
Sbjct: 315 RSGSYSGR----SPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYS 363
Score = 36.6 bits (83), Expect = 0.052
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Frame = +2
Query: 80 SYSWRRIKRTPSYSWRRNTMTPSY----SWIRNTMTPS-YSWRRNTMTPSYSWRRNTM-- 238
S ++ K++P + RR +++P Y ++ +T +PS YS R+ +++P YS RR++
Sbjct: 256 SSNYDSYKKSPGSTSRRQSVSPPYKEPSAYQSSTRSPSPYSRRQRSVSP-YSRRRSSSYE 314
Query: 239 -TPSYSWRRIKRTPSYSWKRNTMTPSYSWRRIKRTP 343
+ SYS R +PS +R + +P S R + R+P
Sbjct: 315 RSGSYSGR----SPSPYGRRRSSSPFLSKRSLSRSP 346
>sp|P10552|FMRF_DROME FMRFamide-related peptides precursor [Contains: FMRFamide A;
Corticotropin-releasing factor like; AAMDRY-amide;
DPKQDFMRF-amide; TPAEDFMRF-amide; SDNFMRF-amide;
SPKQDFMRF-amide; PDNFMRF-amide; SAPQDFVRS-amide;
MDSNFIRF-amide]
Length = 347
Score = 38.5 bits (88), Expect = 0.014
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +2
Query: 209 PSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMTPSYSWRRIKRTPSYSWRRITMTPSDSW 388
P + R P + R R P + R P + R R P + R TP++ +
Sbjct: 150 PKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDF 209
Query: 389 RRITMTPSDSWRRITMTPSDSWRRITMTPSDSWR 490
R TP++ + R SD++ R +P + R
Sbjct: 210 MRFGRTPAEDFMRFGR--SDNFMRFGRSPHEELR 241
Score = 37.0 bits (84), Expect = 0.040
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = +2
Query: 260 RIKRTPSYSWKRNTMTPSYSWRRIKRTPSYSWRRITMTPSDSWRRITMTPSDSWRRITMT 439
R R P + R P + R R P + R P + R P + R T
Sbjct: 145 RYGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRT 204
Query: 440 PSDSWRRITMTPSDSWRR 493
P++ + R TP++ + R
Sbjct: 205 PAEDFMRFGRTPAEDFMR 222
Score = 35.8 bits (81), Expect = 0.089
Identities = 23/94 (24%), Positives = 37/94 (39%)
Frame = +2
Query: 176 PSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMTPSYSWRRIKRTPSYSW 355
P + R P + R P + R R P + R P + R RTP+ +
Sbjct: 150 PKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDF 209
Query: 356 RRITMTPSDSWRRITMTPSDSWRRITMTPSDSWR 457
R TP++ + R SD++ R +P + R
Sbjct: 210 MRFGRTPAEDFMRFGR--SDNFMRFGRSPHEELR 241
Score = 33.9 bits (76), Expect = 0.34
Identities = 23/94 (24%), Positives = 37/94 (39%)
Frame = +2
Query: 143 PSYSWIRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRTPSYSWKRNTMTPSYSW 322
P ++R P + R P + R P + R R P + R TP+ +
Sbjct: 150 PKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDF 209
Query: 323 RRIKRTPSYSWRRITMTPSDSWRRITMTPSDSWR 424
R RTP+ + R SD++ R +P + R
Sbjct: 210 MRFGRTPAEDFMRFGR--SDNFMRFGRSPHEELR 241
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/85 (23%), Positives = 33/85 (38%)
Frame = +2
Query: 29 RIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSYSWIRNTMTPSYSWRRNTMT 208
R R P + R P + R R P + R P ++R P + R T
Sbjct: 145 RYGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRT 204
Query: 209 PSYSWRRNTMTPSYSWRRIKRTPSY 283
P+ + R TP+ + R R+ ++
Sbjct: 205 PAEDFMRFGRTPAEDFMRFGRSDNF 229
Score = 32.0 bits (71), Expect = 1.3
Identities = 20/85 (23%), Positives = 33/85 (38%)
Frame = +2
Query: 95 RIKRTPSYSWRRNTMTPSYSWIRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSWRRIKRT 274
R R P + R P ++R P + R P + R P + R RT
Sbjct: 145 RYGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRT 204
Query: 275 PSYSWKRNTMTPSYSWRRIKRTPSY 349
P+ + R TP+ + R R+ ++
Sbjct: 205 PAEDFMRFGRTPAEDFMRFGRSDNF 229
Score = 30.8 bits (68), Expect = 2.9
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = +2
Query: 11 PSYSWRRIKRTPSYSWRRNTMTPSYSWRRIKRTPSYSWRRNTMTPSYSWIRNTMTPSYSW 190
P + R R P + R P + R R P + R P ++R TP+ +
Sbjct: 150 PKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDF 209
Query: 191 RRNTMTPSYSWRRNTMTPSYSWRRIKRTP 277
R TP+ + R S ++ R R+P
Sbjct: 210 MRFGRTPAEDFMR--FGRSDNFMRFGRSP 236
Score = 30.8 bits (68), Expect = 2.9
Identities = 22/89 (24%), Positives = 35/89 (39%)
Frame = +2
Query: 77 PSYSWRRIKRTPSYSWRRNTMTPSYSWIRNTMTPSYSWRRNTMTPSYSWRRNTMTPSYSW 256
P + R R P + R P ++R P + R P + R TP+ +
Sbjct: 150 PKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRTPAEDF 209
Query: 257 RRIKRTPSYSWKRNTMTPSYSWRRIKRTP 343
R RTP+ + R S ++ R R+P
Sbjct: 210 MRFGRTPAEDFMR--FGRSDNFMRFGRSP 236
>sp|Q8TF01|SFR17_HUMAN Splicing factor, arginine/serine-rich 130 (Serine-arginine-rich
splicing regulatory protein 130) (SRrp130) (SR-rich
protein) (SR-related protein)
Length = 805
Score = 37.0 bits (84), Expect = 0.040
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Frame = -1
Query: 505 TESTSSPRIRRCHSDSSPRIRRCHRDSSPRIRRCH-RDSSPRIRRCHRDSSPRIRGCSFD 329
T STSS +S SS R R SSP+ ++ H R SP I+ S R +
Sbjct: 524 TSSTSSTVSSSSYSSSSGSSRTSSRSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIE 583
Query: 328 SSPRIRRCHRVSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRVSSPRIRRCHRVSYPRI 149
S+ RV R + +S R RR +R SP R S R RR +R S R
Sbjct: 584 SNRA-----RVKIRDRRRSNRNSIERERRRNR--SPSRERRRSRSRSRDRRTNRASRSRS 636
Query: 148 RRCHRVSSPR 119
R ++ R
Sbjct: 637 RDRRKIDDQR 646
>sp|P50770|VE2_HPV24 Regulatory protein E2
Length = 467
Score = 35.0 bits (79), Expect = 0.15
Identities = 33/102 (32%), Positives = 45/102 (44%)
Frame = -1
Query: 496 TSSPRIRRCHSDSSPRIRRCHRDSSPRIRRCHRDSSPRIRRCHRDSSPRIRGCSFDSSPR 317
T P+ + C +++ R R R+SSP RC R SS R ++ R + R R + R
Sbjct: 226 TQQPQ-QACSDETTKRKRYGRRESSPTDSRCRRRSSSRQKKQGRRARSRTRSRCSSTQTR 284
Query: 316 IRRCHRVSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRVSS 191
R R S RG RRC R +PR +R SS
Sbjct: 285 SRSTSRRSRSTSRG--------NRRC-RGDTPRGQRGVSTSS 317
Score = 33.5 bits (75), Expect = 0.44
Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Frame = -1
Query: 280 RGCSFDSSPRIRRCHRVSSPRIRRCHRVSSPRIRRCHRVSYPRIRRCHRVSSPRIRGCSF 101
+ CS +++ R R R SSP RC R SS R ++ R + R R R SS + R S
Sbjct: 231 QACSDETTKRKRYGRRESSPTDSRCRRRSSSRQKKQGRRARSRTR--SRCSSTQTRSRST 288
Query: 100 DSSPRI-----RRCHRVSSPRIRGCSFDSSPRIRRCHR 2
R RRC + RG S S R R R
Sbjct: 289 SRRSRSTSRGNRRCRGDTPRGQRGVSTSSRGRGRGSRR 326
Score = 30.0 bits (66), Expect = 4.9
Identities = 36/127 (28%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Frame = -1
Query: 514 RHYTESTSSPRIRRCHSDSSPRIRRCHRDSSPRIR-RC-------------HRDSSPRIR 377
+ Y SSP RC SS R ++ R + R R RC R +S R
Sbjct: 241 KRYGRRESSPTDSRCRRRSSSRQKKQGRRARSRTRSRCSSTQTRSRSTSRRSRSTSRGNR 300
Query: 376 RCHRDSSPRIRGCSFDSSPRIRRCHRVSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRV 197
RC D+ RG S S R R R S S +PR + R R R +
Sbjct: 301 RCRGDTPRGQRGVSTSSRGRGRGSRRSS------SSSSPTPRTKASQRGCDTRSVRDSGI 354
Query: 196 SSPRIRR 176
S + R
Sbjct: 355 SPGDVGR 361
>sp|P83183|HSPC_ELECI Cysteine-rich protamine
Length = 84
Score = 34.7 bits (78), Expect = 0.20
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -1
Query: 493 SSPRIR-----RCHSDSSPRIRRCHRDSSPRIRRCHRDSSPRIRRCHRDSSP----RIRG 341
S PR R RC S S R RRC R S +++C R S RR R P ++R
Sbjct: 4 SKPRCRPRCKPRCRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPCPRKKLRC 63
Query: 340 CSFDSSPRIRRCHRVSFPRIR 278
C P+ RRC + R R
Sbjct: 64 CK--RRPK-RRCPKRKKKRCR 81
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Frame = -1
Query: 262 SSPRIR-----RCHRVSSPRIRRCHRVSSPRIRRCHRVSYPRIRRCHRVSSP----RIRG 110
S PR R RC S R RRC R S +++C R RR R P ++R
Sbjct: 4 SKPRCRPRCKPRCRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPCPRKKLRC 63
Query: 109 CSFDSSPRIRRCHRVSSPRIR 47
C P+ RRC + R R
Sbjct: 64 CK--RRPK-RRCPKRKKKRCR 81
Score = 30.8 bits (68), Expect = 2.9
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = -1
Query: 328 SSPRIR-RCHRVSFPRIRGCSFDSSPRIRRCHRVSSPRIRRCHRVSSPRIRRCHRVSYP- 155
S PR R RC PR C S R RRC R S +++C R S RR R P
Sbjct: 4 SKPRCRPRCK----PR---CRSRSKKRCRRCRRRCSRIVKKCCRRRSKCCRRRRRCPCPC 56
Query: 154 ---RIRRCHRVSSPRIRGCSFDSSPRIRR 77
++R C R P+ R C R RR
Sbjct: 57 PRKKLRCCKR--RPK-RRCPKRKKKRCRR 82
>sp|P30640|YNE1_CAEEL Hypothetical protein R08D7.1 in chromosome III
Length = 458
Score = 34.3 bits (77), Expect = 0.26
Identities = 40/112 (35%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Frame = -1
Query: 514 RHYTESTSSPRIRRCH-SDSSP-----RIRR-----CHRDSSPRIRRCHRDS--SPRIRR 374
RH ++ +SP RR H SD+SP +IR +R S PR RR DS SP R
Sbjct: 139 RHDSDKDNSPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPPRNR 198
Query: 373 CHRDSSPRIRGCSFDSSPRIRRCHRVSFPRIRGCSFDSSPRIRRCHRVSSPR 218
RDS D+SP R R S P R D SP R+ ++ P+
Sbjct: 199 SRRDS---------DNSPPRR---RPSSPARRRKDDDLSPP-RKSRKIEEPK 237
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,938,273
Number of Sequences: 369166
Number of extensions: 1657058
Number of successful extensions: 5245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4880
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)