Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_A04
(819 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 283 3e-76
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 283 5e-76
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 283 5e-76
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 272 7e-73
sp|P36411|RAB7_DICDI Ras-related protein Rab7 257 2e-68
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 251 1e-66
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 242 8e-64
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 234 2e-61
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 234 3e-61
sp|P31022|RAB7_PEA Ras-related protein Rab7 229 5e-60
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 283 bits (725), Expect = 3e-76
Identities = 134/185 (72%), Positives = 157/185 (84%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQW 362
CCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ W
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 363 CQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQ 539
C SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSA 202
Query: 540 NRCGC 554
C C
Sbjct: 203 ESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 283 bits (723), Expect = 5e-76
Identities = 134/185 (72%), Positives = 157/185 (84%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQW 362
CCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ W
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 363 CQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQ 539
C SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASA 202
Query: 540 NRCGC 554
C C
Sbjct: 203 ESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 283 bits (723), Expect = 5e-76
Identities = 133/185 (71%), Positives = 157/185 (84%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQW 362
CCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ W
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 363 CQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQ- 539
C SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ ++ +
Sbjct: 143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASA 202
Query: 540 NRCGC 554
C C
Sbjct: 203 ESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 272 bits (696), Expect = 7e-73
Identities = 130/185 (70%), Positives = 154/185 (83%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQIWDTAGQERFQSL VAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQW 362
CCVLV+DV PNTFKTLDSWR EFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ W
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142
Query: 363 CQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQ 539
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP + L+ +D+
Sbjct: 143 SYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSA 202
Query: 540 NRCGC 554
C C
Sbjct: 203 ESCSC 207
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 257 bits (657), Expect = 2e-68
Identities = 126/183 (68%), Positives = 148/183 (80%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK++MVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES-RAVSIRRAQQ 359
CCVL YDV + TF+ LDSWRDEFLIQ+GPRDP+ FPFVV+GNK+DLE+ R VS +RA
Sbjct: 83 CCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAAS 142
Query: 360 WCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQ 539
WCQSKG+IPYFE SAKEA+NVEQAF +AR A+ E+ + PT I + + +
Sbjct: 143 WCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED--GLVFPIPTNIQVIPEPQPAKS 200
Query: 540 NRC 548
C
Sbjct: 201 GCC 203
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 251 bits (642), Expect = 1e-66
Identities = 123/188 (65%), Positives = 147/188 (78%), Gaps = 4/188 (2%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+ YKATIGADFLT++V+VDDR VTMQ+WDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE--SRAVSIRRAQ 356
CCVLVYDV +F LDSWRDEFLIQ+ PRDP+ FPFVV+GNK+D+E R +S +RA
Sbjct: 83 CCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAM 142
Query: 357 QWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDF--PTQIHLNDDQHS 530
+CQSKG+IPYFE SAKEA+NVEQAF +AR AL QE + DF P IH+ +D
Sbjct: 143 TFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIEND--- 199
Query: 531 NRQNRCGC 554
++ C C
Sbjct: 200 --RDGCAC 205
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 242 bits (618), Expect = 8e-64
Identities = 117/186 (62%), Positives = 149/186 (80%), Gaps = 2/186 (1%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
S+MNQ+VNRKF+ YKATIGADFLTK+V+VDD+VVT+Q+WDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE--SRAVSIRRAQ 356
CCVLVYDV +F+TLDSWRDEFLIQ+ P +PE FPF+++GNKVD+E R VS +A
Sbjct: 83 CCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKAL 142
Query: 357 QWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNR 536
+CQ++G+IPYFE SAKEA+NV++AF VA+ AL + DI +DF IHL+ + ++
Sbjct: 143 AFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDME---SQ 199
Query: 537 QNRCGC 554
+ C C
Sbjct: 200 KTSCYC 205
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 234 bits (598), Expect = 2e-61
Identities = 116/187 (62%), Positives = 140/187 (74%), Gaps = 3/187 (1%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VNRKF+NQYKATIGADFLTK+V DDR+ T+QIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE---SRAVSIRRA 353
CCVLV+DV + +F L++WR+EFLIQ+ P DPE FPFVV+GNKVD++ SR VS ++A
Sbjct: 83 CCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKA 142
Query: 354 QQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSN 533
+ WC SKG+IPYFE SAKE NV+ AF +AR AL E + +I P I +
Sbjct: 143 KAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIY--LPETIDVASGGRPQ 200
Query: 534 RQNRCGC 554
R C C
Sbjct: 201 RSTGCEC 207
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 234 bits (596), Expect = 3e-61
Identities = 114/187 (60%), Positives = 142/187 (75%), Gaps = 3/187 (1%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VNRKF+NQYKATIGADFLTK+V +DR+ T+QIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE---SRAVSIRRA 353
CCVLVYDV + +F+ L++WR+EFLIQ+ P DPE FPFVV+GNK+D++ SR VS ++A
Sbjct: 83 CCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKA 142
Query: 354 QQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSN 533
+ WC SKG+IPYFE SAKE NV+ AF +A+ AL E + +I P I +
Sbjct: 143 KAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIY--LPDTIDVAGGGRQQ 200
Query: 534 RQNRCGC 554
R + C C
Sbjct: 201 RSSGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 229 bits (585), Expect = 5e-60
Identities = 112/187 (59%), Positives = 141/187 (75%), Gaps = 3/187 (1%)
Frame = +3
Query: 3 SLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQIWDTAGQERFQSLGVAFYRGAD 182
SLMNQ+VN+KF+NQYKATIGADFLTK+V +DR+ T+QIWDTAGQERFQSLGVAFYRGAD
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82
Query: 183 CCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE---SRAVSIRRA 353
CCVLVYDV +F L++WR+EFLIQ+ P DPE FPFVVIGNK+D++ SR VS ++A
Sbjct: 83 CCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKA 142
Query: 354 QQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSN 533
+ WC +KG+IPYFE SAKE +NVE+AF +A+ AL + ++ P I + +
Sbjct: 143 RAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELY--LPDTIDVGNSSQP- 199
Query: 534 RQNRCGC 554
R C C
Sbjct: 200 RSTGCEC 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,795,199
Number of Sequences: 369166
Number of extensions: 1852080
Number of successful extensions: 5043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4588
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)