Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_A03
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 57 2e-08
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 56 4e-08
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 55 8e-08
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 55 8e-08
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 55 8e-08
sp|P62169|CSPC_BACAN Cold shock-like protein cspC >gi|49061... 52 5e-07
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 51 1e-06
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 51 1e-06
sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG 51 1e-06
sp|P39158|CSPC_BACSU Cold shock protein cspC 50 2e-06
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEARXXXXXXX 168
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 50 YGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEG 108
Query: 169 XXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 276
K +N R Y R G +Y+ Q+Y N
Sbjct: 109 VPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNN 143
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 55.8 bits (133), Expect = 4e-08
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEARXXXXXXX 168
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 50 YGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGP 108
Query: 169 XXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 276
K +N+ R Y R G +Y+ Q+Y +
Sbjct: 109 VPVQGSKYAADRNNYRRYPRRRGPPRNYQ-QNYQNS 143
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 55.1 bits (131), Expect = 8e-08
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEARXXXXXXX 168
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 70 YGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 128
Query: 169 XXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 276
K +N R Y R G +Y+ Q+Y +
Sbjct: 129 VPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 55.1 bits (131), Expect = 8e-08
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEARXXXXXXX 168
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 72 YGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 130
Query: 169 XXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 276
K +N R Y R G +Y+ Q+Y +
Sbjct: 131 VPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 55.1 bits (131), Expect = 8e-08
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEARXXXXXXX 168
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 69 YGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGG 127
Query: 169 XXXXXXKPFFQQNDNRSYGNRGGDRSDYRNQSYSGN 276
K +N R Y R G +Y+ Q+Y +
Sbjct: 128 VPVQGSKYAADRNHYRRYPRRRGPPRNYQ-QNYQNS 162
>sp|P62169|CSPC_BACAN Cold shock-like protein cspC
sp|P62170|CSPC_BACCE Cold shock-like protein cspC
sp|P62171|CSPC_BACCR Cold shock-like protein cspC
Length = 65
Score = 52.4 bits (124), Expect = 5e-07
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 144
+GFI+REDG+D VFVH S+I SL +G++V+FD+V G++G +A
Sbjct: 14 FGFIEREDGDD--VFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 51.2 bits (121), Expect = 1e-06
Identities = 27/52 (51%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEA 144
YGFI R+D + DVFVH ++I N S+ DGE+V+FDVV+G KG EA
Sbjct: 46 YGFINRDDTKE-DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEA 96
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNAN----SLADGEEVQFDVVQGSKGLEA 144
YGFI R D + DVFVH ++I N S+ DGE V+FDVV+G KG EA
Sbjct: 55 YGFINRNDSKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEA 105
>sp|Q9S170|CSPG_SHEVI Cold shock-like protein cspG
Length = 70
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 144
+GFI +++G D DVFVH SI + +LA+G++V F+V QG KGL+A
Sbjct: 18 FGFITQDNGGD-DVFVHFRSITSDGFKTLAEGQKVSFEVEQGQKGLQA 64
>sp|P39158|CSPC_BACSU Cold shock protein cspC
Length = 66
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +1
Query: 1 YGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLEA 144
+GFI+RE+G+D VFVH S+I + SL +G++V FDV QG++G +A
Sbjct: 15 FGFIERENGDD--VFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQA 60
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,199,030
Number of Sequences: 369166
Number of extensions: 717091
Number of successful extensions: 1790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)