Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P18
(864 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subun... 489 e-138
sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subun... 486 e-137
sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subuni... 482 e-136
sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subuni... 480 e-135
sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subun... 480 e-135
sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subun... 479 e-135
sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subun... 478 e-135
sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subun... 478 e-135
sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit... 474 e-133
sp|P09469|VATA_DAUCA Vacuolar ATP synthase catalytic subuni... 444 e-124
>sp|P38607|VATA2_HUMAN Vacuolar ATP synthase catalytic subunit A, osteoclast isoform
(V-ATPase A subunit 2) (Vacuolar proton pump alpha
subunit 2) (V-ATPase 69 kDa subunit 2) (Isoform HO68)
Length = 615
Score = 489 bits (1258), Expect = e-138
Identities = 244/286 (85%), Positives = 263/286 (91%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
YTVD+ VL TEF+ ++K TM +KLPANYPLLTGQRVLD+LFPCVQGG
Sbjct: 183 YTVDDVVLETEFDGERSKFTMLQVWPVRQPRPVTEKLPANYPLLTGQRVLDSLFPCVQGG 242
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQSLSK+SNSDVIIYVGCGERGNEMSEVL+DFPQL++EIDG ES
Sbjct: 243 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPQLSLEIDGVTES 302
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR
Sbjct: 303 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 362
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+
Sbjct: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTT 421
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++
Sbjct: 422 ATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNF 467
>sp|Q27331|VATA2_DROME Vacuolar ATP synthase catalytic subunit A isoform 2 (V-ATPase A
subunit 2) (Vacuolar proton pump alpha subunit 2)
(V-ATPase 69 kDa subunit 2)
Length = 614
Score = 486 bits (1250), Expect = e-137
Identities = 243/286 (84%), Positives = 261/286 (91%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y VD+ VL TEF+ TKHTM +KLPAN+PLLTGQRVLD+LFPCVQGG
Sbjct: 182 YKVDDVVLETEFDGEITKHTMLQVWPVRHHAPVTEKLPANHPLLTGQRVLDSLFPCVQGG 241
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQ+LSK+SNSDVIIYVGCGERGNEMSEVL+DFP+L+VEIDG ES
Sbjct: 242 TTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELSVEIDGVTES 301
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR
Sbjct: 302 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 361
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMP +SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 362 LAEMPRDSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 420
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++
Sbjct: 421 ATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNF 466
>sp|O16109|VATA_AEDAE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 615
Score = 482 bits (1240), Expect = e-136
Identities = 241/286 (84%), Positives = 261/286 (91%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
YTVD+ +L TEF+ K +M +KLPAN+PLLTGQRVLD+LFPCVQGG
Sbjct: 183 YTVDDIILETEFDGEINKWSMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG 242
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQ+LSK+SNSDVIIYVGCGERGNEMSEVL+DFP+L+VEIDG ES
Sbjct: 243 TTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELSVEIDGVTES 302
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR
Sbjct: 303 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 362
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 363 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 421
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFYDK++
Sbjct: 422 ATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYDKNF 467
>sp|P31400|VATA_MANSE Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 617
Score = 480 bits (1235), Expect = e-135
Identities = 239/286 (83%), Positives = 261/286 (91%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y V + VL TEF+ + ++TM +KLPAN+PLLTGQRVLD+LFPCVQGG
Sbjct: 185 YKVTDVVLETEFDGEKAQYTMLQVWPVRQPRPVTEKLPANHPLLTGQRVLDSLFPCVQGG 244
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQ+LSK+SNSDVIIYVGCGERGNEMSEVL+DFP+LTVEI+G ES
Sbjct: 245 TTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTVEIEGVTES 304
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR
Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 364
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G PD R+GSV+IVGAVSPPGGDFSDPVT+
Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPD-REGSVSIVGAVSPPGGDFSDPVTA 423
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALDDFY+K+Y
Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDDFYEKNY 469
>sp|P38606|VATA1_HUMAN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1) (Isoform VA68)
Length = 617
Score = 480 bits (1235), Expect = e-135
Identities = 238/286 (83%), Positives = 259/286 (90%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y + VL EF V+ K TM +KLPAN+PLLTGQRVLDALFPCVQGG
Sbjct: 185 YDTSDVVLELEFEGVKEKFTMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGG 244
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQSLSK+SNSDVIIYVGCGERGNEMSEVL+DFP+LT+E+DG+ ES
Sbjct: 245 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKVES 304
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGR
Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGR 364
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 423
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+
Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHF 469
>sp|P48602|VATA1_DROME Vacuolar ATP synthase catalytic subunit A isoform 1 (V-ATPase A
subunit 1) (Vacuolar proton pump alpha subunit 1)
(V-ATPase 69 kDa subunit 1)
Length = 614
Score = 479 bits (1234), Expect = e-135
Identities = 238/286 (83%), Positives = 260/286 (90%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y +++ VL TEF+ TKHTM +KLPAN+PL TGQRVLD+LFPCVQGG
Sbjct: 182 YNLEDIVLETEFDGEITKHTMLQVWPVRQPRPVTEKLPANHPLFTGQRVLDSLFPCVQGG 241
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQ+LSK+SNSDVIIYVGCGERGNEMSEVL+DFP+LT EIDG ES
Sbjct: 242 TTAIPGAFGCGKTVISQALSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTCEIDGVTES 301
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNV+MMADSTSRWAEALREISGR
Sbjct: 302 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVAMMADSTSRWAEALREISGR 361
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLA+FYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 362 LAEMPADSGYPAYLGARLATFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 420
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPSINWLIS+SKY RALD++YDK+Y
Sbjct: 421 ATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDEYYDKNY 466
>sp|P50516|VATA1_MOUSE Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 478 bits (1230), Expect = e-135
Identities = 237/286 (82%), Positives = 258/286 (90%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y VL EF V+ K +M +KLPAN+PLLTGQRVLDALFPCVQGG
Sbjct: 185 YDASNVVLELEFEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGG 244
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQSLSK+SNSDVIIYVGCGERGNEMSEVL+DFP+LT+E+DG+ ES
Sbjct: 245 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKAES 304
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGR
Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGR 364
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 423
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+
Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHF 469
>sp|P31404|VATA1_BOVIN Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 478 bits (1230), Expect = e-135
Identities = 236/286 (82%), Positives = 259/286 (90%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y + VL EF ++ K +M +KLPAN+PLLTGQRVLDALFPCVQGG
Sbjct: 185 YDTSDVVLELEFEGIKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGG 244
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQSLSK+SNSDVIIYVGCGERGNEMSEVL+DFP+LT+E+DG+ ES
Sbjct: 245 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERGNEMSEVLRDFPELTMEVDGKVES 304
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMADSTSRWAEALREISGR
Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGR 364
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSV+IVGAVSPPGGDFSDPVTS
Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVSIVGAVSPPGGDFSDPVTS 423
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+
Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHF 469
>sp|Q29048|VATA1_PIG Vacuolar ATP synthase catalytic subunit A, ubiquitous isoform
(V-ATPase A subunit 1) (Vacuolar proton pump alpha
subunit 1) (V-ATPase 69 kDa subunit 1)
Length = 617
Score = 474 bits (1221), Expect = e-133
Identities = 236/286 (82%), Positives = 258/286 (90%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y + VL EF V+ K +M +KLPAN+PLLTGQRVLDALFPCVQGG
Sbjct: 185 YDTSDVVLELEFEGVKEKFSMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGG 244
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEIDGRNES 362
TTAIPGAFGCGKTVISQSLSK+SNSDVIIYVGCGER NEMSEVL+DFP+LT+E+DG+ ES
Sbjct: 245 TTAIPGAFGCGKTVISQSLSKYSNSDVIIYVGCGERVNEMSEVLRDFPELTMEVDGKVES 304
Query: 363 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGR 542
IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGY+VSMMA+STSRWAEALREISGR
Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGR 364
Query: 543 LAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVTS 722
LAEMPA+SGYPAYLGARLASFYERAGRV+C+G P ER+GSVTIVGAVSPPGGDFSDPVTS
Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNP-EREGSVTIVGAVSPPGGDFSDPVTS 423
Query: 723 ATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDKHY 860
ATLGIVQVFWGLDKKLAQRKHFPS+NWLIS+SKY RALD++YDKH+
Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHF 469
>sp|P09469|VATA_DAUCA Vacuolar ATP synthase catalytic subunit A (V-ATPase A subunit)
(Vacuolar proton pump alpha subunit) (V-ATPase 69 kDa
subunit)
Length = 623
Score = 444 bits (1143), Expect = e-124
Identities = 223/285 (78%), Positives = 248/285 (87%), Gaps = 1/285 (0%)
Frame = +3
Query: 3 YTVDETVLITEFNKVQTKHTMXXXXXXXXXXXXADKLPANYPLLTGQRVLDALFPCVQGG 182
Y++ +TVL EF V+ + TM A KL A+ PLLTGQRVLDALFP V GG
Sbjct: 187 YSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGG 246
Query: 183 TTAIPGAFGCGKTVISQSLSKFSNSDVIIYVGCGERGNEMSEVLQDFPQLTVEI-DGRNE 359
T AIPGAFGCGKTVISQ+LSK+SNSD ++YVGCGERGNEM+EVL DFPQLT+ + DGR E
Sbjct: 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREE 306
Query: 360 SIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISG 539
S+MKRT LVANTSNMPVAAREASIYTGIT++EYFRDMGYNVSMMADSTSRWAEALREISG
Sbjct: 307 SVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISG 366
Query: 540 RLAEMPAESGYPAYLGARLASFYERAGRVQCIGGPDERQGSVTIVGAVSPPGGDFSDPVT 719
RLAEMPA+SGYPAYL ARLASFYERAG+V+C+GGP ER GSVTIVGAVSPPGGDFSDPVT
Sbjct: 367 RLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP-ERNGSVTIVGAVSPPGGDFSDPVT 425
Query: 720 SATLGIVQVFWGLDKKLAQRKHFPSINWLISHSKYTRALDDFYDK 854
SATL IVQVFWGLDKKLAQRKHFPS+NWLIS+SKY+ AL+ FY+K
Sbjct: 426 SATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEK 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,672,234
Number of Sequences: 369166
Number of extensions: 2513932
Number of successful extensions: 8922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8241
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)