Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P08
(267 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 132 3e-31
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 121 6e-28
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 119 2e-27
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 119 2e-27
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 119 2e-27
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 119 3e-27
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 118 5e-27
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 114 5e-26
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 114 5e-26
sp|P49690|RL23_ARATH 60S ribosomal protein L23 112 2e-25
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 132 bits (332), Expect = 3e-31
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = +2
Query: 5 VCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPV 184
VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPV
Sbjct: 62 VCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPV 121
Query: 185 AKECADMWPK 214
AKECAD+WP+
Sbjct: 122 AKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 121 bits (303), Expect = 6e-28
Identities = 57/70 (81%), Positives = 63/70 (90%)
Frame = +2
Query: 5 VCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPV 184
V SVKKGKPELRKKVLQ VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV
Sbjct: 62 VASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPV 121
Query: 185 AKECADMWPK 214
KECAD+WP+
Sbjct: 122 TKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 119 bits (299), Expect = 2e-27
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 182 VAKECADMWPK 214
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 119 bits (299), Expect = 2e-27
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 182 VAKECADMWPK 214
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 119 bits (299), Expect = 2e-27
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 182 VAKECADMWPK 214
VAKECAD+WP+
Sbjct: 121 VAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 119 bits (297), Expect = 3e-27
Identities = 55/70 (78%), Positives = 63/70 (90%)
Frame = +2
Query: 5 VCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPV 184
V +VKKGKPELRKKV+ VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPV
Sbjct: 62 VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPV 121
Query: 185 AKECADMWPK 214
AKECAD+WP+
Sbjct: 122 AKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 118 bits (295), Expect = 5e-27
Identities = 54/70 (77%), Positives = 63/70 (90%)
Frame = +2
Query: 5 VCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPV 184
V +VKKGKPELRKKV+ VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPV
Sbjct: 62 VATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPV 121
Query: 185 AKECADMWPK 214
AKECAD+WP+
Sbjct: 122 AKECADLWPR 131
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 114 bits (286), Expect = 5e-26
Identities = 50/71 (70%), Positives = 63/71 (88%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKP+LRKK++ +V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP
Sbjct: 60 VLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGP 119
Query: 182 VAKECADMWPK 214
VAKECAD+WP+
Sbjct: 120 VAKECADLWPR 130
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 114 bits (286), Expect = 5e-26
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKP LRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGP
Sbjct: 61 VMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 182 VAKECADMWP 211
V KECAD+WP
Sbjct: 121 VXKECADLWP 130
>sp|P49690|RL23_ARATH 60S ribosomal protein L23
Length = 140
Score = 112 bits (281), Expect = 2e-25
Identities = 50/71 (70%), Positives = 62/71 (87%)
Frame = +2
Query: 2 VVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGP 181
V+ +VKKGKP+LRKKVL V++RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 182 VAKECADMWPK 214
+ KECAD+WP+
Sbjct: 121 IGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,167,015
Number of Sequences: 369166
Number of extensions: 519650
Number of successful extensions: 1334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)