Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P07
(272 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 133 1e-31
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 132 2e-31
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 132 2e-31
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 132 2e-31
sp|P52273|TBA_BOMMO Tubulin alpha chain 132 2e-31
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 132 3e-31
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 131 4e-31
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 130 7e-31
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 130 9e-31
sp|P30436|TBA_ONCKE Tubulin alpha chain 130 9e-31
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 133 bits (334), Expect = 1e-31
Identities = 67/90 (74%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVD+VL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FAVYPAP +A AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAVYPAPQVATAVVEPYNSILTTHTTLEHS 198
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 132 bits (333), Expect = 2e-31
Identities = 67/90 (74%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVDLVL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FAVYPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAVYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 132 bits (333), Expect = 2e-31
Identities = 67/90 (74%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVDLVL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FAVYPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAVYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 132 bits (332), Expect = 2e-31
Identities = 66/90 (73%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVDLVL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FA+YPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 132 bits (332), Expect = 2e-31
Identities = 66/90 (73%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVDLVL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FA+YPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 132 bits (331), Expect = 3e-31
Identities = 65/90 (72%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
T+GKEI+DLVL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FA+YPAP I+ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAIYPAPQISTAVVEPYNSILTTHTTLEHS 198
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 131 bits (330), Expect = 4e-31
Identities = 66/90 (73%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEIVDLVL+RVRKL+DQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FA+YPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 130 bits (328), Expect = 7e-31
Identities = 64/90 (71%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
T+GKE++D+VL+R+RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 109 TVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FAVYPAP I+ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FAVYPAPQISTAVVEPYNSILTTHTTLEHS 198
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 130 bits (327), Expect = 9e-31
Identities = 63/90 (70%), Positives = 72/90 (80%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEI+DLVL+R+RKLADQCTGLQGFL+F MERLSV YGKKSKLE
Sbjct: 109 TIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 168
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
F++YPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 169 FSIYPAPQVSTAVVEPYNSILTTHTTLEHS 198
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 130 bits (327), Expect = 9e-31
Identities = 65/90 (72%), Positives = 71/90 (78%)
Frame = +2
Query: 2 TIGKEIVDLVLERVRKLADQCTGLQGFLIFPXXXXXXXXXXXXXXMERLSVVYGKKSKLE 181
TIGKEI+D+VL+R RKLADQCTGLQGFLIF MERLSV YGKKSKLE
Sbjct: 103 TIGKEIIDIVLDRTRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLE 162
Query: 182 FAVYPAPHIAPAVVEPYNSVLTTHTTLEHS 271
FAVYPAP ++ AVVEPYNS+LTTHTTLEHS
Sbjct: 163 FAVYPAPQVSTAVVEPYNSILTTHTTLEHS 192
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,274,255
Number of Sequences: 369166
Number of extensions: 522480
Number of successful extensions: 2106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)