Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P06
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46778|RL21_HUMAN 60S ribosomal protein L21 120 1e-27
sp|Q6QN05|RL21_CHILA 60S ribosomal protein L21 120 1e-27
sp|P20280|RL21_RAT 60S ribosomal protein L21 116 2e-26
sp|O09167|RL21_MOUSE 60S ribosomal protein L21 115 2e-26
sp|O42706|RL21B_SCHPO 60S ribosomal protein L21-B 107 8e-24
sp|Q9UUC1|RL21A_SCHPO 60S ribosomal protein L21-A 107 1e-23
sp|Q02753|RL21A_YEAST 60S ribosomal protein L21-A 103 2e-22
sp|Q12672|RL21B_YEAST 60S ribosomal protein L21-B 103 2e-22
sp|P34334|RL21_CAEEL 60S ribosomal protein L21 102 2e-22
sp|P49667|RL21_PYUST 60S ribosomal protein L21 96 3e-20
>sp|P46778|RL21_HUMAN 60S ribosomal protein L21
Length = 160
Score = 120 bits (301), Expect = 1e-27
Identities = 56/97 (57%), Positives = 75/97 (77%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQHA+G++VNK+V +I+ K+INVRIEH+K S R+ FLKRVK+N++ KK AKE G
Sbjct: 64 VYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQLIA 28
T+V+LKRQPA P AH V+T L+P+PY+ +A
Sbjct: 124 TWVQLKRQPAPpreAHFVRTNGKEPELLEPIPYEFMA 160
>sp|Q6QN05|RL21_CHILA 60S ribosomal protein L21
Length = 160
Score = 120 bits (301), Expect = 1e-27
Identities = 56/97 (57%), Positives = 75/97 (77%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQHA+G++VNK+V +I+ K+INVRIEH+K S R+ FLKRVK+N++ KK AKE G
Sbjct: 64 VYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQLIA 28
T+V+LKRQPA P AH V+T L+P+PY+ +A
Sbjct: 124 TWVQLKRQPAPpreAHFVRTNGKEPELLEPIPYEFMA 160
>sp|P20280|RL21_RAT 60S ribosomal protein L21
Length = 160
Score = 116 bits (290), Expect = 2e-26
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQHA+G+IVNK+V +I+ K+INVRIEH+K S R+ FLKRVK+N++ KK AKE G
Sbjct: 64 VYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQLIA 28
T+V+L QPA P AH V+T L+P+PY+ +A
Sbjct: 124 TWVQLNGQPAPpreAHFVRTNGKEPELLEPIPYEFMA 160
>sp|O09167|RL21_MOUSE 60S ribosomal protein L21
Length = 160
Score = 115 bits (289), Expect = 2e-26
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQHA+G+IVNK+V +I+ K+INVRIEH+K S R+ FLKRVK+N++ KK AKE G
Sbjct: 64 VYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQLIA 28
T+V+LKR A P AH V+T L+P+PY+ +A
Sbjct: 124 TWVQLKRHAAPpreAHFVRTNGKEPELLEPIPYEFMA 160
>sp|O42706|RL21B_SCHPO 60S ribosomal protein L21-B
Length = 160
Score = 107 bits (267), Expect = 8e-24
Identities = 52/93 (55%), Positives = 66/93 (70%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQ ++G+++ K VGNR + K++NVRIEHVK S CR+DFL RVK NE +K AK G
Sbjct: 64 VYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPY 40
V+L+RQPA P AH V T+ N V L P+ Y
Sbjct: 124 KTVQLRRQPAPPATAHFVSTENNEPVTLHPVAY 156
>sp|Q9UUC1|RL21A_SCHPO 60S ribosomal protein L21-A
Length = 160
Score = 107 bits (266), Expect = 1e-23
Identities = 52/93 (55%), Positives = 66/93 (70%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVTQ ++G+++ K VGNR + K++NVRIEHVK S CR+DFL RVK NE +K AK G
Sbjct: 64 VYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPY 40
V+L+RQPA P AH V T+ N V L P+ Y
Sbjct: 124 KTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAY 156
>sp|Q02753|RL21A_YEAST 60S ribosomal protein L21-A
Length = 160
Score = 103 bits (256), Expect = 2e-22
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVT+ ++G+I+NK VGNR + K++N+R+EH+K S CR++FL+RVK N + AK G
Sbjct: 64 VYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQ 37
V+LKRQPAQP + +V T+ N L P+PY+
Sbjct: 124 VAVQLKRQPAQpreSRIVSTEGNVPQTLAPVPYE 157
>sp|Q12672|RL21B_YEAST 60S ribosomal protein L21-B
Length = 160
Score = 103 bits (256), Expect = 2e-22
Identities = 47/94 (50%), Positives = 68/94 (72%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
VYNVT+ ++G+I+NK VGNR + K++N+R+EH+K S CR++FL+RVK N + AK G
Sbjct: 64 VYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQG 123
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQ 37
V+LKRQPAQP + +V T+ N L P+PY+
Sbjct: 124 VAVQLKRQPAQpreSRIVSTEGNVPQTLAPVPYE 157
>sp|P34334|RL21_CAEEL 60S ribosomal protein L21
Length = 161
Score = 102 bits (255), Expect = 2e-22
Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 1/98 (1%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
++NVT+ A+G+IVNKRV I+PK+IN+RIEH+K S CR DFL RVK N+E +K AK G
Sbjct: 64 IFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAG 123
Query: 138 TYV-ELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQLIA 28
V LKR P P AH V T+ N L P+ ++++A
Sbjct: 124 QPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>sp|P49667|RL21_PYUST 60S ribosomal protein L21
Length = 156
Score = 95.5 bits (236), Expect = 3e-20
Identities = 47/94 (50%), Positives = 66/94 (70%)
Frame = -3
Query: 318 VYNVTQHALGLIVNKRVGNRIIPKKINVRIEHVKKSNCREDFLKRVKKNEEIKKLAKENG 139
++NVTQHA+G+IVNK+V RII K+INVRIEH+K S R F++RV +NE +K A+E
Sbjct: 63 IFNVTQHAVGIIVNKQVRGRIIAKRINVRIEHIKHSKSRISFIQRVHENERKRKEAREKK 122
Query: 138 TYVELKRQPAQPTAAHVVKTKKNNVVFLKPMPYQ 37
V LKRQP QP H V++ + ++P+PY+
Sbjct: 123 IRVNLKRQPQQPRTGHFVRSSAEPEL-VEPIPYE 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,472,747
Number of Sequences: 369166
Number of extensions: 455273
Number of successful extensions: 1803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)