Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_O18
(485 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q4H192|MATK_MICJU Maturase K (Intron maturase) 30 2.3
sp|Q8H1G3|MTPC4_ARATH Metal tolerance protein C4 (AtMTPc4) 29 5.0
sp|Q09453|GLRB4_CAEEL Glycine receptor beta-type chain 4 pr... 29 6.6
>sp|Q4H192|MATK_MICJU Maturase K (Intron maturase)
Length = 522
Score = 30.4 bits (67), Expect = 2.3
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 102 FLSRVNFNRR**SLFILHHQRNFFTDSFLSEM 7
FLS VN++++ + F+ HH NFF F S+M
Sbjct: 75 FLSSVNYSKQ--NRFVGHHHTNFFYSRFYSQM 104
>sp|Q8H1G3|MTPC4_ARATH Metal tolerance protein C4 (AtMTPc4)
Length = 457
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Frame = -1
Query: 392 HRSHNLVLECQSHLRGLVHLHCLDN---------------LSHIYSSHFHYNLRLEIISA 258
HRS + ++ SH+RGL+ +CL+ L YSSH ++ R + +
Sbjct: 46 HRSFSSLIRSSSHVRGLISTNCLNKGLGVRCSVSLDRETPLIDTYSSHRNFFTRAKQVKR 105
Query: 257 FFLED 243
+ D
Sbjct: 106 IEIND 110
>sp|Q09453|GLRB4_CAEEL Glycine receptor beta-type chain 4 precursor
Length = 473
Score = 28.9 bits (63), Expect = 6.6
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -2
Query: 463 EDRIN----NHRGASG-ERW*RFLLPLVFIVVIIWFWNANLIFGG 344
EDRIN N + A +R+ R L PL FI+ I++W L + G
Sbjct: 421 EDRINRVEENRKNAQKIDRYSRALFPLAFIIFNIFYWIYYLKYAG 465
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,513,387
Number of Sequences: 369166
Number of extensions: 801199
Number of successful extensions: 2601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2596
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)