Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_O16
(487 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58932|BCSA_XANAC Cellulose synthase catalytic subunit [... 35 0.12
sp|Q9Y493|ZAN_HUMAN Zonadhesin precursor 32 0.78
sp|Q8DHN4|ARGJ_SYNEL Arginine biosynthesis bifunctional pro... 29 6.6
sp|Q9TSV4|TCF19_PIG Transcription factor 19 (Transcription ... 28 8.6
sp|P75405|Y376_MYCPN Hypothetical protein MPN376 (A19_orf1140) 28 8.6
>sp|P58932|BCSA_XANAC Cellulose synthase catalytic subunit [UDP-forming]
Length = 729
Score = 34.7 bits (78), Expect = 0.12
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 PKVGKTRMTPKNALVRLHSGDVQ---PIHFAYAINAGGPWAGDVAKLVYMGG 237
PK+GK +TPK LV D Q P F +N G AG V +L+Y+GG
Sbjct: 492 PKLGKFNVTPKGGLVARSYFDAQIAKPYLFLLLLNVVGMVAG-VLRLIYVGG 542
>sp|Q9Y493|ZAN_HUMAN Zonadhesin precursor
Length = 2812
Score = 32.0 bits (71), Expect = 0.78
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 70 SPGLMDLPKVGKTRMTPKNALVRLHSGDVQPIHFAYAINAGGPWAGDVAKLVYMGGLDSH 249
SP + +VG R +N V + SG QP+ + G + A +V MG + +
Sbjct: 475 SPPIPLWKRVGSQRPYWQNTSVTVPSGHQQPMQLIFK----GIQGSNTASVVAMGFILIN 530
Query: 250 GGLLPLPVEPRVQHAFVVSPARSDNPGQAPGI 345
G P+ V P + VSP S P + G+
Sbjct: 531 PGTCPVKVLPELP---PVSPVSSTGPSETTGL 559
>sp|Q8DHN4|ARGJ_SYNEL Arginine biosynthesis bifunctional protein argJ [Includes:
Glutamate N-acetyltransferase (Ornithine
acetyltransferase) (Ornithine transacetylase) (OATase);
Amino-acid acetyltransferase (N-acetylglutamate
synthase) (AGS)] [Contains: Arginine biosynthesis
bifunctional protein argJ alpha chain; Arginine
biosynthesis bifunctional protein argJ beta chain]
Length = 419
Score = 28.9 bits (63), Expect = 6.6
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 172 AYAINAGGPWAGDVAKL-VYMGGLDSHGGLLPLPVEPRVQHAFVV--SPARSDNPGQAPG 342
A A AG P+ D + L + +GG+ PLP +P HA++V + A +D GQ
Sbjct: 325 AAAGRAGVPF--DASNLAIALGGIPMMRHGQPLPFDPAAAHAYLVQQAAASTDASGQ-QS 381
Query: 343 IDCPFIVD 366
ID P +++
Sbjct: 382 IDHPVVIE 389
>sp|Q9TSV4|TCF19_PIG Transcription factor 19 (Transcription factor SC1)
Length = 346
Score = 28.5 bits (62), Expect = 8.6
Identities = 14/53 (26%), Positives = 20/53 (37%)
Frame = +3
Query: 261 AAPGGTSCSARICCLASSKR*PWSSSRHRLSFHC*LQWIECAPGQAWWRFHCV 419
AA GG C+A CCL + + W++C W+ CV
Sbjct: 286 AAGGGEPCAAPCCCLPQEET---------------VAWVQCDGCDTWFHVACV 323
>sp|P75405|Y376_MYCPN Hypothetical protein MPN376 (A19_orf1140)
Length = 1140
Score = 28.5 bits (62), Expect = 8.6
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 40 VGFEFDEGKLSPGLMDLPKVGKTRMTPKNALVRLHSGDVQPIHFA 174
+GF+ DEG GL D + K +TPK++ ++ +GD I A
Sbjct: 601 IGFQ-DEG----GLRDASFINKVALTPKSSKTKIANGDASKIEKA 640
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,959,902
Number of Sequences: 369166
Number of extensions: 1381571
Number of successful extensions: 3937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)