Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N23
(595 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O94903|POSC_HUMAN Proline synthetase co-transcribed bact... 197 2e-50
sp|Q9Z2Y8|PROSC_MOUSE Proline synthetase co-transcribed bac... 184 1e-46
sp|P52057|YU68_CAEEL Hypothetical UPF0001 protein F09E5.8 i... 140 3e-33
sp|P38197|YBD6_YEAST Hypothetical UPF0001 protein YBL036c 117 2e-26
sp|Q9CPD5|Y112_PASMU Hypothetical UPF0001 protein PM0112 94 3e-19
sp|P44506|Y090_HAEIN UPF0001 protein HI0090 93 6e-19
sp|O31727|YLME_BACSU Hypothetical UPF0001 protein ylmE 91 2e-18
sp|O25156|Y395_HELPY Hypothetical UPF0001 protein HP0395 88 1e-17
sp|O66631|Y274_AQUAE Hypothetical UPF0001 protein AQ_274 87 3e-17
sp|P52055|YPI1_VIBAL Hypothetical UPF0001 protein in pilT-p... 85 2e-16
>sp|O94903|POSC_HUMAN Proline synthetase co-transcribed bacterial homolog protein
Length = 275
Score = 197 bits (500), Expect = 2e-50
Identities = 95/177 (53%), Positives = 133/177 (75%), Gaps = 1/177 (0%)
Frame = +1
Query: 1 KAQDEQIITNCPDIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKE 180
KA + +I++ CP+IKWHFIG+LQ +NVNK++ VPNL+++ET++S+ +A +N +
Sbjct: 76 KASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGS 135
Query: 181 NEKLNVMVQINTSGEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAI-NNISQGSS 357
E+L VMVQINTSGE++K G+PP E + I +L+F+GLMTIG+ +++SQG
Sbjct: 136 PERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQG-P 194
Query: 358 NPDFITLYDCREHVCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGERN 528
NPDF L RE +CK LN+P+D VELSMGMS DF+HA+ +GSTNVRIGS+IFGER+
Sbjct: 195 NPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERD 251
>sp|Q9Z2Y8|PROSC_MOUSE Proline synthetase co-transcribed bacterial homolog protein
Length = 274
Score = 184 bits (467), Expect = 1e-46
Identities = 93/177 (52%), Positives = 128/177 (72%), Gaps = 1/177 (0%)
Frame = +1
Query: 1 KAQDEQIITNCPDIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKE 180
KA + +I+++CP+IKWHFIG+LQ +NVNK++ VPNL ++ET++S+ +A +N K
Sbjct: 76 KASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGP 135
Query: 181 NEKLNVMVQINTSGEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAI-NNISQGSS 357
E L VMVQINTSGED+K G+ P E + I + L+F+GLMTIG+ +++SQG
Sbjct: 136 TEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQG-P 194
Query: 358 NPDFITLYDCREHVCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGERN 528
NPDF L R +C+ L +P + VELSMGMS DF+HAI +GSTNVRIGS+IFGER+
Sbjct: 195 NPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERD 251
>sp|P52057|YU68_CAEEL Hypothetical UPF0001 protein F09E5.8 in chromosome II
Length = 244
Score = 140 bits (352), Expect = 3e-33
Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 1/178 (0%)
Frame = +1
Query: 7 QDEQIITNCPDIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKEN- 183
+ + + + C DI+WHFIG +QS + KI P L+ +ET+E+ A+ +++ K N
Sbjct: 66 KSDVLASKCLDIRWHFIGQVQSNKIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANL 125
Query: 184 EKLNVMVQINTSGEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSNP 363
L V+VQ+NTSGED KGGI E + I + ++LKF G MTIG+ +N NP
Sbjct: 126 SPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENP 185
Query: 364 DFITLYDCREHVCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGERN*KN 537
DF L+ R+ + +D VELSMGMS DF AI G+T+VR+GS +FG R KN
Sbjct: 186 DFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKN 243
>sp|P38197|YBD6_YEAST Hypothetical UPF0001 protein YBL036c
Length = 257
Score = 117 bits (293), Expect = 2e-26
Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Frame = +1
Query: 37 DIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKEN-EKLNVMVQIN 213
DIKWHFIG LQ+ + +VPNLY +ET++S+ AK LNE K + + + VQIN
Sbjct: 85 DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQIN 144
Query: 214 TSGEDAKGGIPPD----EVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGS-SNPDFITL 378
TS ED K G+ + EV++F + + +++K GLMTIG+ N + S N DF TL
Sbjct: 145 TSHEDQKSGLNNEAEIFEVIDFF--LSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATL 202
Query: 379 YDCREHVCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGERN*KND 540
+ ++ + ++LSMGMS DF AI G+ VRIG+ IFG R KN+
Sbjct: 203 VEWKKKIDAKF---GTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNE 253
>sp|Q9CPD5|Y112_PASMU Hypothetical UPF0001 protein PM0112
Length = 233
Score = 94.0 bits (232), Expect = 3e-19
Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 1/164 (0%)
Frame = +1
Query: 40 IKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINTS 219
++WHFIG LQS + + ++TL+ IA LNE+ K+ LNV++QIN S
Sbjct: 75 LEWHFIGPLQSNKTKLVAE--HFDWMQTLDRKKIADRLNEQRPHYKK--PLNVLIQINIS 130
Query: 220 GEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSNPDFITLYDCREHV 399
ED+K GI P+E+++ +K IQN HL GLM I A + + F ++ E +
Sbjct: 131 DEDSKSGIQPNEMLDL-AKQIQNLPHLCLRGLMAIPAPTD-DLATQEQAFTQMHSLFEQL 188
Query: 400 CKALNLPSDDVE-LSMGMSGDFEHAIMMGSTNVRIGSSIFGERN 528
+AL P ++ LSMGM+ D AI GST VRIG++IFG R+
Sbjct: 189 KQAL--PDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARD 230
>sp|P44506|Y090_HAEIN UPF0001 protein HI0090
Length = 237
Score = 92.8 bits (229), Expect = 6e-19
Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Frame = +1
Query: 37 DIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINT 216
+++WHFIG LQS + + ++TL+ IA LNE+ + LNV++QIN
Sbjct: 74 NLEWHFIGPLQSNKTRLVAE--HFDWMQTLDRAKIADRLNEQ--RPTNKAPLNVLIQINI 129
Query: 217 SGEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGA-INNIS-QGSSNPDFITLYDCR 390
S E++K GI P+E++ +K I+N HL GLM I A +NI+ Q ++ + L++
Sbjct: 130 SDEESKSGIQPEEMLTL-AKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQL 188
Query: 391 EHVCKALNLPSDDVE-LSMGMSGDFEHAIMMGSTNVRIGSSIFGERN 528
+ V LP+ ++ LSMGM+ D AI GST VRIG++IFG RN
Sbjct: 189 KQV-----LPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARN 230
>sp|O31727|YLME_BACSU Hypothetical UPF0001 protein ylmE
Length = 230
Score = 91.3 bits (225), Expect = 2e-18
Identities = 60/160 (37%), Positives = 92/160 (57%), Gaps = 1/160 (0%)
Frame = +1
Query: 43 KWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINTSG 222
+WHFIG+LQS+ + V ++ I +L+ + +AK + ++ + VQ+NTS
Sbjct: 73 EWHFIGSLQSRKAKSV--VNSVSYIHSLDRLSLAKEIEKRA-----EGTVRCFVQVNTSL 125
Query: 223 EDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSNPDFITLYDCREHVC 402
E +K G+ +EV+ F ++ FEH+ GLMT+ + + Q F +L + R+ V
Sbjct: 126 EPSKHGMKKEEVIPFIQEL-SGFEHILVAGLMTMAPLTD-DQDQIRSCFRSLRELRDQVQ 183
Query: 403 KALNLPSDD-VELSMGMSGDFEHAIMMGSTNVRIGSSIFG 519
K LN P+ ELSMGMS DFE AI G+T +RIGSS+ G
Sbjct: 184 K-LNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>sp|O25156|Y395_HELPY Hypothetical UPF0001 protein HP0395
Length = 222
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/161 (34%), Positives = 91/161 (56%)
Frame = +1
Query: 40 IKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINTS 219
++WH IG+LQ +N +L + ++ +L+S+ +A + ++ + N LN ++Q+N++
Sbjct: 73 LEWHMIGSLQENKINALLSLKPA-LLHSLDSLKLALKIEKRCEILGVN--LNALLQVNSA 129
Query: 220 GEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSNPDFITLYDCREHV 399
E++K G+ P+E +E S+I + +HLK GLM IGA + + FIT + +
Sbjct: 130 YEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGA-HTDDEKEIEKSFITTKKLFDQI 188
Query: 400 CKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGE 522
A LSMGMS DFE AI G+ +RIGS +F E
Sbjct: 189 KNA-------SVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>sp|O66631|Y274_AQUAE Hypothetical UPF0001 protein AQ_274
Length = 228
Score = 87.0 bits (214), Expect = 3e-17
Identities = 55/163 (33%), Positives = 92/163 (56%)
Frame = +1
Query: 37 DIKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINT 216
D++WHFIG LQ+ V ++ + +I +L+ ++A + ++ K N +V++++N
Sbjct: 72 DLEWHFIGRLQTNKVKYLMG--KVVLIHSLDRKNLADEIQKRA--FKNNIVQDVLIEVNV 127
Query: 217 SGEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSNPDFITLYDCREH 396
GE+ KGG+ P+ + E ++ ++K +GLMTI + P F L + R+
Sbjct: 128 GGEETKGGVEPENLKELFEYTLE-LPNVKVLGLMTIPPYLENPE-DVRPYFRKLRELRDE 185
Query: 397 VCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGER 525
+ + N+ LSMGMS DFE AI G+T VRIG+ +FGER
Sbjct: 186 LQREYNVALP--HLSMGMSHDFEVAIEEGATIVRIGTLLFGER 226
>sp|P52055|YPI1_VIBAL Hypothetical UPF0001 protein in pilT-proC intergenic region (ORF1)
Length = 233
Score = 84.7 bits (208), Expect = 2e-16
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 1/164 (0%)
Frame = +1
Query: 40 IKWHFIGNLQSKNVNKILRVPNLYVIETLESIDIAKSLNEKLGKIKENEKLNVMVQINTS 219
I+WHFIG +QS + + + T++ IA+ LN++ + E + L V++Q+NTS
Sbjct: 78 IEWHFIGPIQSNKSRLVAE--HFDWVHTIDRTKIAQRLNDQ--RPSELKPLQVLIQVNTS 133
Query: 220 GEDAKGGIPPDEVVEFTSKIIQNFEHLKFIGLMTIGAINNISQGSSN-PDFITLYDCREH 396
GE +K G+ EV E +++I +L GLM+I A N+S S +F L ++
Sbjct: 134 GEASKSGVTEAEVFEL-AELISRLPNLTLRGLMSIPA--NVSDYESQLHEFQKLATLKQT 190
Query: 397 VCKALNLPSDDVELSMGMSGDFEHAIMMGSTNVRIGSSIFGERN 528
+ P D LSMGMSGD AI GST VRIG++IFG R+
Sbjct: 191 L--EAQFPEIDT-LSMGMSGDMTAAIEAGSTMVRIGTAIFGARD 231
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,864,140
Number of Sequences: 369166
Number of extensions: 1209618
Number of successful extensions: 3974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3936
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)