Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N19
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 110 1e-24
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 110 1e-24
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 110 1e-24
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 107 7e-24
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 106 2e-23
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 105 4e-23
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 104 7e-23
sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein 103 9e-23
sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein 103 2e-22
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 102 2e-22
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 110 bits (274), Expect = 1e-24
Identities = 53/103 (51%), Positives = 66/103 (64%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVC
Sbjct: 544 SYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVC 603
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 110 bits (274), Expect = 1e-24
Identities = 53/103 (51%), Positives = 66/103 (64%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVC
Sbjct: 544 SYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVC 603
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 110 bits (274), Expect = 1e-24
Identities = 53/103 (51%), Positives = 66/103 (64%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVC
Sbjct: 544 SYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVC 603
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 646
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 107 bits (268), Expect = 7e-24
Identities = 54/106 (50%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MK+TVEDEKLK KIS+ D++ I+DKC E IGWLDKNQ A ++EF++ KELEKVC
Sbjct: 544 SYAFNMKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVC 603
Query: 189 NPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSAGGMPGGMPEGMPGGFPGAGAAPGGGSSGPTIEEVD 649
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 106 bits (264), Expect = 2e-23
Identities = 53/108 (49%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MK+TVEDEKL+ KIS+ D+ I++KC E IGWLDKNQ A K+E+++H KELEKVC
Sbjct: 544 SYAFNMKSTVEDEKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVC 603
Query: 189 NPIMTKMYQ-----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQGAGGMPGGMPEGMAGGFPGAGGAAPGGGGSSGPTIEEVD 651
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 105 bits (261), Expect = 4e-23
Identities = 53/106 (50%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MK+TVEDEKLK KIS+ D+ I+DKC E I WLDKNQ A KDE+++ K+LEKVC
Sbjct: 544 SYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVC 603
Query: 189 NPIMTKMYQ---XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSDGGMPGGMPDGMPGGFQELGAAPGGGSSGPTIEEVD 649
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 104 bits (259), Expect = 7e-23
Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MKATVEDEKL+ KI++ D++ I+DKC E I WLDKNQ A K+EF++ KELEKVC
Sbjct: 544 SYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVC 603
Query: 189 NPIMTKMYQ----XXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 604 NPIITKLYQSAGGMPGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 650
>sp|P27541|HSP70_BRUMA Heat shock 70 kDa protein
Length = 644
Score = 103 bits (258), Expect = 9e-23
Identities = 53/103 (51%), Positives = 63/103 (61%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SYA+ MK T+EDEKLKDKISE D+K I +KC E + WLD NQ A KDEF++ KELE VC
Sbjct: 543 SYAFNMKQTIEDEKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVC 602
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 603 NPIITKLYQSAGGMPGGMPGGMPGGAPGAGSTG-GGPTIEEVD 644
>sp|Q05944|HSP70_HYDMA Heat shock 70 kDa protein
Length = 654
Score = 103 bits (256), Expect = 2e-22
Identities = 51/104 (49%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SY Y MK TVEDEK+K KISE D+K I+ KC E + W+DKNQ A KD++++ KELEKVC
Sbjct: 551 SYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVC 610
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQ-GPTVEEVD 317
NPI+TK+YQ GPT+EEVD
Sbjct: 611 NPIITKLYQAGGGMPGGMPGGMPGGMPGSGSKASSGGPTIEEVD 654
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 102 bits (255), Expect = 2e-22
Identities = 51/103 (49%), Positives = 64/103 (62%)
Frame = +3
Query: 9 SYAYQMKATVEDEKLKDKISESDRKLIVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVC 188
SY Y +K TVEDEKL+ KISE D+ I+DKCQE I WLD+NQ A KDE+++ KELE+VC
Sbjct: 547 SYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVC 606
Query: 189 NPIMTKMYQXXXXXXXXXXXXXXXXXXXXXXXXKQGPTVEEVD 317
NPI++K+YQ GPT+EEVD
Sbjct: 607 NPIISKLYQ----------GGPGGGSGGGGSGASGGPTIEEVD 639
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,561,084
Number of Sequences: 369166
Number of extensions: 355059
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)