Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N10
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36417|GBF_DICDI G-box binding factor (GBF) 33 0.38
sp|P18079|HEM1_RHOCA 5-aminolevulinate synthase (5-aminolev... 31 1.1
sp|P02441|KRA3_SHEEP Keratin, high-sulfur matrix protein, I... 30 2.5
sp|Q9UQC2|GAB2_HUMAN GRB2-associated binding protein 2 (GRB... 30 2.5
sp|Q9EQH1|GAB2_RAT GRB2-associated binding protein 2 (GRB2-... 30 2.5
sp|Q9Z1S8|GAB2_MOUSE GRB2-associated binding protein 2 (GRB... 30 2.5
sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, I... 30 2.5
sp|P93022|ARFG_ARATH Auxin response factor 7 (Non-phototrop... 30 3.2
sp|Q9HM89|EF1A_HALSA Elongation factor 1-alpha (EF-1-alpha)... 29 4.2
sp|P62455|HIS7_PHOPR Histidine biosynthesis bifunctional pr... 28 7.2
>sp|P36417|GBF_DICDI G-box binding factor (GBF)
Length = 708
Score = 32.7 bits (73), Expect = 0.38
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = +3
Query: 66 HNHQFKMKFLQDLFQHTKLTIREQVDNHN---KCLVEYNQQLELQQPHRICIQVQCRILQ 236
+N+Q+++ F+Q Q + + Q H+ + +++QQ++ QQ H+ Q Q Q
Sbjct: 112 YNYQYQLMFMQQQAQQNQPPQQNQQQQHHQQQQQQPQHHQQMQQQQHHQQMQQQQQHHQQ 171
Query: 237 IPIICHHSHIFPVFHIHNIHTHNHQ 311
+ HH + H + H HQ
Sbjct: 172 MQQQQHHQQM----QHHQLQQHQHQ 192
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/95 (24%), Positives = 39/95 (41%)
Frame = +3
Query: 39 QHREEQKYLHNHQFKMKFLQDLFQHTKLTIREQVDNHNKCLVEYNQQLELQQPHRICIQV 218
QH + Q++ H HQ + + Q QH + ++Q +H + +++Q + QQ H+ Q
Sbjct: 182 QHHQLQQHQHQHQQQQQQQQHQQQHHQQQQQQQQQHHQQ--QQHHQHSQPQQQHQHNQQQ 239
Query: 219 QCRILQIPIICHHSHIFPVFHIHNIHTHNHQCNLV 323
Q H HN H Q N +
Sbjct: 240 Q-------------------HQHNQQQHQQQQNQI 255
>sp|P18079|HEM1_RHOCA 5-aminolevulinate synthase (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
Length = 401
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 183 ELQQPHRICIQVQCRILQIPIICHHSHIFPVFHIHNIHT 299
+ QQ H ++++ + L +PII H SHI PV +HT
Sbjct: 305 DAQQMHAKVLKMRLKALGMPIIDHGSHIVPVVIGDPVHT 343
>sp|P02441|KRA3_SHEEP Keratin, high-sulfur matrix protein, IIIA3
Length = 131
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 193 CCSSNCWLYSTRHLLWLSTCSRIVSL---VCWKRSCRNFILNWWL*RYFCSSRCC 38
CC ++C R W +TC + VS+ C SC+ + R F +S CC
Sbjct: 77 CCPTSCQAVVCRPCCWATTCCQPVSVQCPCCRPTSCQPAPCSRTTCRTFRTSPCC 131
>sp|Q9UQC2|GAB2_HUMAN GRB2-associated binding protein 2 (GRB2-associated binder-2)
(pp100)
Length = 676
Score = 30.0 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 14 PIRTSNIKATSGGTEVSSQPPVQNEVPARPLPT 112
PI T +I +T G + P+QN V A P+P+
Sbjct: 566 PISTQSITSTDSGDSEENYVPMQNPVSASPVPS 598
>sp|Q9EQH1|GAB2_RAT GRB2-associated binding protein 2 (GRB2-associated binder-2)
Length = 665
Score = 30.0 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 14 PIRTSNIKATSGGTEVSSQPPVQNEVPARPLPT 112
PI T +I +T G + P+QN V A P+P+
Sbjct: 555 PISTQSITSTDSGDSEENYVPMQNPVSASPVPS 587
>sp|Q9Z1S8|GAB2_MOUSE GRB2-associated binding protein 2 (GRB2-associated binder-2) (PH
domain containing adaptor molecule p97)
Length = 665
Score = 30.0 bits (66), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 14 PIRTSNIKATSGGTEVSSQPPVQNEVPARPLPT 112
PI T +I +T G + P+QN V A P+P+
Sbjct: 555 PISTQSITSTDSGDSEENYVPMQNPVSASPVPS 587
>sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)
Length = 132
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 193 CCSSNCWLYSTRHLLWLSTCSRIVSL---VCWKRSCRNFILNWWL*RYFCSSRCC 38
CC ++C R W +TC + VS+ C SC+ + R F +S CC
Sbjct: 78 CCPTSCQAVVCRPCCWATTCCQPVSVQCPCCRPTSCQPAPCSRTTCRTFRTSPCC 132
>sp|P93022|ARFG_ARATH Auxin response factor 7 (Non-phototropic hypocotyl 4) (BIPOSTO
protein) (Auxin-responsive protein IAA21/IAA23/IAA25)
Length = 1164
Score = 29.6 bits (65), Expect = 3.2
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +3
Query: 15 QFVLQISRQHREEQKYLHNHQFKMKFLQDLFQHTKLTIREQVDNHN------KCLVEYNQ 176
Q +L S H+++Q Q + + LQ Q +L ++ +N+ + L++ Q
Sbjct: 506 QQLLHSSLNHQQQQSQSQQQQQQQQLLQ---QQQQLQSQQHSNNNQSQSQQQQQLLQQQQ 562
Query: 177 QLELQQPHRICIQVQCRILQIPIICHHSHIFP 272
Q +LQQ H+ +Q Q + Q+ SH P
Sbjct: 563 QQQLQQQHQQPLQQQTQQQQLRTQPLQSHSHP 594
>sp|Q9HM89|EF1A_HALSA Elongation factor 1-alpha (EF-1-alpha) (Elongation factor Tu)
(EF-Tu)
Length = 421
Score = 29.3 bits (64), Expect = 4.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 329 GIDQVALVVVGMDIVDMEHREYMAVVAYYRDL 234
GID++ + V MD+VD + +Y VV+ +DL
Sbjct: 136 GIDELIVAVNKMDVVDYDESKYNEVVSGVKDL 167
>sp|P62455|HIS7_PHOPR Histidine biosynthesis bifunctional protein hisB [Includes:
Histidinol-phosphatase ; Imidazoleglycerol-phosphate
dehydratase (IGPD)]
Length = 361
Score = 28.5 bits (62), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 401 FNEDNIDYNQDKCYIQVDSYILQEGIDQVALVVVGMDIVDMEHREYMAV 255
FNEDN + K + V SY+ Q +D V+G D++ E MA+
Sbjct: 97 FNEDNCSCRKPKLGL-VKSYLQQGRVDFATSAVIGDRQTDLQLAENMAI 144
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,975,468
Number of Sequences: 369166
Number of extensions: 637691
Number of successful extensions: 2452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)