Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N02
(237 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8LBL5|PRT1_ARATH Ubiquitin protein ligase PRT1 (Proteol... 33 0.21
sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Lami... 31 0.78
sp|P60214|SC49B_TITCA Toxin Tc49b 30 1.3
sp|P40798|STC_DROME Shuttle craft protein 30 1.7
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein ... 30 2.3
sp|O88799|ZAN_MOUSE Zonadhesin precursor 30 2.3
sp|Q28833|VWF_PIG Von Willebrand factor precursor (vWF) 29 3.0
sp|P54356|TSG_DROME Twisted gastrulation protein precursor 29 3.9
sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Lami... 28 5.1
sp|P42892|ECE1_HUMAN Endothelin-converting enzyme 1 (ECE-1) 28 6.6
>sp|Q8LBL5|PRT1_ARATH Ubiquitin protein ligase PRT1 (Proteolysis 1 protein)
Length = 410
Score = 33.1 bits (74), Expect = 0.21
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 37 YGAN-DGCSNY--VTKKFNCKVHDCHLKSGYDACRDCLIPNCPEMPSEIRGQ 183
+GA D C Y + ++ CK DC + GYD C+DC E PS++ G+
Sbjct: 307 FGAGCDSCGVYPIIGDRYRCK--DCKEEIGYDLCKDCY-----ETPSKVPGR 351
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3110
Score = 31.2 bits (69), Expect = 0.78
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Frame = +1
Query: 19 CMPRYCYGANDGCSNYVTKKFNCKVH------DCHLKSGY-----DACRDCLIPNCP-EM 162
C P C+G + C + + NCK H D L Y DC CP +
Sbjct: 754 CEPCQCFGHAESCDDVTGECLNCKDHTGGPYCDKCLPGFYGEPTKGTSEDCQPCACPLNI 813
Query: 163 PSEIRGQVCSMDKSCG 210
PS C +D+S G
Sbjct: 814 PSNNFSPTCHLDRSLG 829
>sp|P60214|SC49B_TITCA Toxin Tc49b
Length = 64
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 46 NDGCS-NYVTKKFNCKVHDCHLKSGYDA-CRDCLIPNCPEMPSEIR 177
NDGC +T+ VH+C LK G D C L C MP ++
Sbjct: 9 NDGCKYGCITRPHQYCVHECELKKGTDGYCAYWLACYCYNMPDWVK 54
>sp|P40798|STC_DROME Shuttle craft protein
Length = 1106
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 34 CYGANDG-CSNYVTKKFNCKVHDCHLKSGYDACRDCLIPNCPEMPSEIRGQVCSMDKSCG 210
C A+D C TKK +C H C+++ D DC +P C+ SCG
Sbjct: 688 CNRADDARCKRRCTKKRSCGKHKCNVECCIDIDHDCPLP-------------CNRTLSCG 734
>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1048
Score = 29.6 bits (65), Expect = 2.3
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 27/89 (30%)
Frame = +1
Query: 10 CRDCMPR----YCYGANDGCS-----NYVTKKFNCKVHDCHLKS--------------GY 120
CR C + C G GCS + T NC++ C + GY
Sbjct: 505 CRICQCKTREELCTGLISGCSLDCSFGFQTDAHNCEICQCRPRPKKCKPIVCDKYCPFGY 564
Query: 121 ----DACRDCLIPNCPEMPSEIRGQVCSM 195
C C CPEMP G++C M
Sbjct: 565 LKNKHGCEICRCKKCPEMPC---GKICPM 590
>sp|O88799|ZAN_MOUSE Zonadhesin precursor
Length = 5376
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +1
Query: 19 CMP-RYCYGANDGCSNYVTKKFNCKVHDCHLKSGYDACRDCLIPNCPEMPSEIRGQVCSM 195
C P YC +NDG SN V C H S + C P+C + G +
Sbjct: 2437 CPPGTYCKNSNDGSSNCVKISLQCPAH-----SKFTDCLPPCHPSCSDPDGHCEGISTNA 2491
Query: 196 DKSC 207
+C
Sbjct: 2492 HSNC 2495
>sp|Q28833|VWF_PIG Von Willebrand factor precursor (vWF)
Length = 2482
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 1 FSECRDCMPRYCYGANDGCSNYVTKKFNCKVHDCHLKSG---YDACRDCL 141
++ C PR+C G + C ++ ++ C H L S +AC C+
Sbjct: 1878 YNHCEHGCPRHCEGNSSSCGDHPSEGCFCPPHQVMLGSSCVPEEACTQCV 1927
>sp|P54356|TSG_DROME Twisted gastrulation protein precursor
Length = 249
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Frame = +1
Query: 46 NDGCSNYV----------TKKFNCKVHDCHLKSGYDACRDCLIPNC 153
+DGC+ V T+ CK++DCH C+DCL NC
Sbjct: 23 DDGCNEVVCGSVVSKCLITQSCQCKLNDCH------CCKDCL--NC 60
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3106
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Frame = +1
Query: 19 CMPRYCYGANDGCSNYVTKKFNCKVH-------DCHLKSGYDACR----DCLIPNCP-EM 162
C P C+ + C + + NCK H +C D R DC CP +
Sbjct: 750 CEPCQCFAHAEACDDITGECLNCKDHTGGPYCNECLPGFYGDPTRGSPEDCQPCACPLNI 809
Query: 163 PSEIRGQVCSMDKSCG 210
PS C +D+S G
Sbjct: 810 PSNNFSPTCHLDRSLG 825
>sp|P42892|ECE1_HUMAN Endothelin-converting enzyme 1 (ECE-1)
Length = 770
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 146 PTVQKCHQKYEVKCARWIKA 205
PTV CH + C WIKA
Sbjct: 117 PTVDPCHDFFSYACGGWIKA 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,356,069
Number of Sequences: 369166
Number of extensions: 469283
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)