Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M13
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZVD3|ARR13_ARATH Putative two-component response regul... 32 3.0
sp|Q923L3|CSMD1_MOUSE CUB and sushi multiple domains protei... 30 8.6
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13
Length = 572
Score = 31.6 bits (70), Expect = 3.0
Identities = 25/86 (29%), Positives = 39/86 (45%)
Frame = +3
Query: 258 ISEEAEPSDANYIYSAKVMLLNSPDMAEIIKSVCEGDSDISDNNQYKSLNKTLHFLVGSK 437
+S E DAN ++ML+ P+ A ++K+ + S SD S N + GS+
Sbjct: 144 LSTEQNQKDANVSVPQQIMLV--PEQAYVLKTKKKNCSSKSDTRTVNSTNVSHVSTNGSR 201
Query: 438 GKNEPMAIGGPWSASLDGPNPDEDPK 515
+ GGP S DG + + PK
Sbjct: 202 KNRKRKPKGGP---SDDGESLSQPPK 224
>sp|Q923L3|CSMD1_MOUSE CUB and sushi multiple domains protein 1 precursor
Length = 3564
Score = 30.0 bits (66), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -1
Query: 747 QNQAYNPTLRV*IKRL---FLLGSQVHFHCD 664
QN+ ++P + V +R FLLGS V FHCD
Sbjct: 694 QNECHDPGIPVNGRRFGDRFLLGSSVSFHCD 724
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,406,100
Number of Sequences: 369166
Number of extensions: 1839386
Number of successful extensions: 4408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4408
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)