Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M08
(175 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytoch... 73 2e-13
sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytoch... 73 2e-13
sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytoch... 71 9e-13
sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytoch... 69 3e-12
sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytoch... 64 8e-11
sp|P24985|COX1_CYPCA Cytochrome c oxidase subunit 1 (Cytoch... 63 2e-10
sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytoch... 62 4e-10
sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytoch... 61 7e-10
sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytoch... 61 7e-10
sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytoch... 60 1e-09
>sp|P18943|COX1_CHICK Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 515
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 104
VLQPELTATNIE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 482 VLQPELTATNIEWIHGCPPPYHTFEEPAFVQVQE 515
>sp|P24984|COX1_COTJA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 73.2 bits (178), Expect = 2e-13
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 104
VLQPELTATNIE IHGCPPPYHTFEEPAFVQVQE
Sbjct: 483 VLQPELTATNIEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|Q94WR7|COX1_BUTBU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 104
+LQPELT TN+E IHGCPPPYHTFEEPAFVQVQE
Sbjct: 483 ILQPELTTTNVEWIHGCPPPYHTFEEPAFVQVQE 516
>sp|O21399|COX1_STRCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQE 104
VLQPEL ATNIE IHGCPPP+HTFEEPAFVQVQE
Sbjct: 483 VLQPELIATNIEWIHGCPPPHHTFEEPAFVQVQE 516
>sp|Q9MIY8|COX1_BRARE Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 64.3 bits (155), Expect = 8e-11
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 101
VL ELTATN+E +HGCPPPYHTFEEPAFVQ+Q
Sbjct: 482 VLSVELTATNVEWLHGCPPPYHTFEEPAFVQIQ 514
>sp|P24985|COX1_CYPCA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 63.2 bits (152), Expect = 2e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 101
VL ELTATN+E +HGCPPPYHT+EEPAFVQ+Q
Sbjct: 482 VLSVELTATNVEWLHGCPPPYHTYEEPAFVQIQ 514
>sp|Q36775|COX1_GADMO Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 62.0 bits (149), Expect = 4e-10
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQER 107
V+ E+T TN+E +HGCPPPYHTFEEPAFVQ+Q R
Sbjct: 482 VMAVEMTMTNVEWLHGCPPPYHTFEEPAFVQIQTR 516
>sp|P48170|COX1_ONCMY Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 61.2 bits (147), Expect = 7e-10
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = +3
Query: 15 ELTATNIE*IHGCPPPYHTFEEPAFVQVQ 101
ELT+TN+E +HGCPPPYHTFEEPAFVQVQ
Sbjct: 486 ELTSTNVEWLHGCPPPYHTFEEPAFVQVQ 514
>sp|O78681|COX1_CARAU Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 61.2 bits (147), Expect = 7e-10
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 101
VL ELT TN+E +HGCPPPYHT+EEPAFVQ+Q
Sbjct: 482 VLSVELTMTNVEWLHGCPPPYHTYEEPAFVQIQ 514
>sp|P34188|COX1_CROLA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 516
Score = 60.5 bits (145), Expect = 1e-09
Identities = 25/33 (75%), Positives = 29/33 (87%)
Frame = +3
Query: 3 VLQPELTATNIE*IHGCPPPYHTFEEPAFVQVQ 101
V+ ELT TN+E +HGCPPPYHTFEEPAFVQV+
Sbjct: 482 VMSVELTMTNVEWLHGCPPPYHTFEEPAFVQVR 514
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,335,867
Number of Sequences: 369166
Number of extensions: 435630
Number of successful extensions: 1564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)