Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L16
(246 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 (T-box... 29 2.9
sp|Q9Z762|ENGA_CHLPN GTP-binding protein engA 28 5.0
sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting 18 (hVPS18) 28 6.6
sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting 18 28 6.6
sp|P43613|YFL1_YEAST Hypothetical 34.2 kDa protein in SAP15... 28 8.6
>sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 (T-box protein 4)
Length = 545
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 219 IKPLLNXXXXXXYHQSRNTLRHQQITQPTNQPCSICAESWDSRVYHHYLENRSPSNYI 46
+ PLL ++Q N H Q+ +P + P S DS +++H L+ R + ++
Sbjct: 290 VGPLLGTHQALQHYQHENGA-HSQLAEPQDLPLSTFPTQRDSSLFYHCLKRRDGTRHL 346
>sp|Q9Z762|ENGA_CHLPN GTP-binding protein engA
Length = 487
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -1
Query: 153 QQITQPTNQPCSICAESWDSRVYHHYLENRSPSNYIFYGIP 31
Q+ T P I A+S ++ Y +YL+N S++ YGIP
Sbjct: 434 QKTTTPLQFLLFINAKSLLTKHYEYYLKNTLKSSFNLYGIP 474
>sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting 18 (hVPS18)
Length = 973
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 163 VATPANHSAYESALLNLCRIMG---FSRLSPLFRESLPIELYFLWDSLGN 23
VA H AYE AL L R F + SP+ +P +L W +G+
Sbjct: 570 VAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGS 619
>sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting 18
Length = 973
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 163 VATPANHSAYESALLNLCRIMG---FSRLSPLFRESLPIELYFLWDSLGN 23
VA H AYE AL L R F + SP+ +P +L W +G+
Sbjct: 570 VAYHCQHEAYEEALAVLARHRDPQLFYKFSPILIRHIPRQLVDAWIEMGS 619
>sp|P43613|YFL1_YEAST Hypothetical 34.2 kDa protein in SAP155-YMR31 intergenic region
precursor
Length = 295
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -1
Query: 180 HQSRNTLRHQQITQPTNQPCSICAESWDSRVYHHYLENRSPS------NYIFYGIPLATW 19
H +N +++++ + N I + S + ++Y +YL+N P+ + F + TW
Sbjct: 74 HPDKNP-KYRKLYERLNLATQILSNSSNRKIYDYYLQNGFPNYDFHKGGFYFSRMKPKTW 132
Query: 18 FLV 10
FL+
Sbjct: 133 FLL 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,264,748
Number of Sequences: 369166
Number of extensions: 406234
Number of successful extensions: 1213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)