Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L11
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F mem... 389 e-108
sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F mem... 389 e-108
sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER... 249 5e-66
sp|P43535|GCN20_YEAST Protein GCN20 214 3e-55
sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F membe... 188 2e-47
sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F mem... 187 4e-47
sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F mem... 186 6e-47
sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F mem... 186 6e-47
sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 185 1e-46
sp|P63390|YHES_ECO57 Hypothetical ABC transporter ATP-bindi... 142 8e-34
>sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC
transporter 2)
Length = 623
Score = 389 bits (1000), Expect = e-108
Identities = 184/260 (70%), Positives = 220/260 (84%)
Frame = +2
Query: 2 GHGSRKLARQAQSKEKTLKKMVDGGLTQKVIREKNLVFSFPSCGEIPPPVIQVQNVSFKY 181
GHGS KLARQAQSKEKTL+KM+ GLT++V+ +K L F FP CG+IPPPVI VQNVSFKY
Sbjct: 346 GHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKY 405
Query: 182 GANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRY 361
+ P IY+N++FG+DLDTRVALVGPNGAGKSTLLKL+ EL PTDG+IR+HS +IGRY
Sbjct: 406 TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRY 465
Query: 362 HQHLHEILDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRI 541
HQHL E LDL+ + LE+MMK +P IKEK+EMRK +GRYGLTG QQ+ PI++LSDGQ+CR+
Sbjct: 466 HQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRV 525
Query: 542 IFAWLAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWV 721
AWLA PHML LDEPTNHLD+ETID+LADAINEFEGG++LVSHDFRLI +VA+EIWV
Sbjct: 526 CLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 585
Query: 722 CDHGAVTKWPGDIYSYKTSL 781
C+ +TKWPGDI +YK L
Sbjct: 586 CEKQTITKWPGDILAYKEHL 605
Score = 59.7 bits (143), Expect = 9e-09
Identities = 58/184 (31%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Frame = +2
Query: 239 RVALVGPNGAGKSTLLKLIAS----------------ELEPTDGLIRRHSKCRIGRYHQH 370
R L+G NG GKS LL I E+ P+D H +
Sbjct: 113 RYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKT-PLHCVMEVDTERAM 171
Query: 371 LH---EILDLNSTALEWMMKSFPHIKEKD----EMRKK--LGRYGLTGGQQICPIKSLSD 523
L E L E +M+ + ++E D EMR L G T Q +K S
Sbjct: 172 LEKEAERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSG 231
Query: 524 GQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRV 703
G R R+ A P MLLLDEPTNHLDL+ L + + F+ L+LVSH + V
Sbjct: 232 GWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGV 291
Query: 704 AEEI 715
I
Sbjct: 292 CTNI 295
>sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2
Length = 628
Score = 389 bits (1000), Expect = e-108
Identities = 184/260 (70%), Positives = 220/260 (84%)
Frame = +2
Query: 2 GHGSRKLARQAQSKEKTLKKMVDGGLTQKVIREKNLVFSFPSCGEIPPPVIQVQNVSFKY 181
GHGS KLARQAQSKEKTL+KM+ GLT++V+ +K L F FP CG+IPPPVI VQNVSFKY
Sbjct: 351 GHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKY 410
Query: 182 GANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRY 361
+ P IY+N++FG+DLDTRVALVGPNGAGKSTLLKL+ EL PTDG+IR+HS +IGRY
Sbjct: 411 TKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRY 470
Query: 362 HQHLHEILDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRI 541
HQHL E LDL+ + LE+MMK +P IKEK+EMRK +GRYGLTG QQ+ PI++LSDGQ+CR+
Sbjct: 471 HQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRV 530
Query: 542 IFAWLAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWV 721
AWLA PHML LDEPTNHLD+ETID+LADAINEFEGG++LVSHDFRLI +VA+EIWV
Sbjct: 531 CLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWV 590
Query: 722 CDHGAVTKWPGDIYSYKTSL 781
C+ +TKWPGDI +YK L
Sbjct: 591 CEKQTITKWPGDILAYKEHL 610
Score = 57.0 bits (136), Expect = 6e-08
Identities = 57/183 (31%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Frame = +2
Query: 239 RVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCR---------------IGRYHQHL 373
R L+G NG GKS LL I P I + R + L
Sbjct: 118 RYGLIGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAML 177
Query: 374 H---EILDLNSTALEWMMKSFPHIKEKD----EMRKK--LGRYGLTGGQQICPIKSLSDG 526
E L E +M+ + ++E D EMR L G T Q +K S G
Sbjct: 178 EREAERLAHEDAECEKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGG 237
Query: 527 QRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVA 706
R R+ A P MLLLDEPTNHLDL+ L + + F+ L+LVSH + V
Sbjct: 238 WRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVC 297
Query: 707 EEI 715
I
Sbjct: 298 TNI 300
>sp|P40024|YEM6_YEAST Probable ATP-dependent transporter YER036C
Length = 610
Score = 249 bits (637), Expect = 5e-66
Identities = 124/256 (48%), Positives = 178/256 (69%), Gaps = 2/256 (0%)
Frame = +2
Query: 20 LARQAQSKEKTLKKMVDGGLTQKVIREKNLVFSFPSCGEIPPPVIQVQNVSFKYGAN-KP 196
L +QA+S++K L KM GL Q V+ +K F FP +PPPV+ ++SF Y +N
Sbjct: 349 LVKQAKSRQKILDKMEADGLVQPVVPDKVFSFRFPQVERLPPPVLAFDDISFHYESNPSE 408
Query: 197 LIYDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRYHQHLH 376
+Y++++FGVD+D+R+ALVGPNG GKSTLLK++ EL P G + RH+ ++G Y QH
Sbjct: 409 NLYEHLNFGVDMDSRIALVGPNGVGKSTLLKIMTGELTPQSGRVSRHTHVKLGVYSQHSQ 468
Query: 377 EILDLNSTALEWMMKSFPHIKEKDEM-RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAW 553
+ LDL +ALE++ + +I + + R +LGRYGLTG Q + +LS+GQR R++FA
Sbjct: 469 DQLDLTKSALEFVRDKYSNISQDFQFWRGQLGRYGLTGEGQTVQMATLSEGQRSRVVFAL 528
Query: 554 LAEGCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHG 733
LA P++LLLDEPTN LD+ TIDSLADAINEF GG+++VSHDFRL+ ++A++I+V ++
Sbjct: 529 LALEQPNVLLLDEPTNGLDIPTIDSLADAINEFNGGVVVVSHDFRLLDKIAQDIFVVENK 588
Query: 734 AVTKWPGDIYSYKTSL 781
T+W G I YK L
Sbjct: 589 TATRWDGSILQYKNKL 604
Score = 51.6 bits (122), Expect = 2e-06
Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 29/235 (12%)
Frame = +2
Query: 152 IQVQNVSFKYGANKPLIYDNIDFGVDLD--TRVALVGPNGAGKSTLLKLIA--------- 298
I++ +VS + K LI D+ G++L+ R L+G NG GKST LK +A
Sbjct: 82 IKLSSVSLLFHG-KVLIQDS---GLELNYGRRYGLLGENGCGKSTFLKALATREYPIPEH 137
Query: 299 ------------SELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKE 442
SEL D ++ ++ + R + + + + E + + +
Sbjct: 138 IDIYLLDEPAEPSELSALDYVVTE-AQHELKRIEDLVEKTILEDGPESELLEPLYERMDS 196
Query: 443 KD----EMRKKLGRYGLTGGQQ--ICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNH 604
D E R + GL ++ + K +S G + R+ A P +LLLD+PT H
Sbjct: 197 LDPDTFESRAAIILIGLGFNKKTILKKTKDMSGGWKMRVALAKALFVKPTLLLLDDPTAH 256
Query: 605 LDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSY 769
LDLE L + + F+ L+LVSH + V + +T + G+ SY
Sbjct: 257 LDLEACVWLEEYLKRFDRTLVLVSHSQDFLNGVCTNMIDMRAQKLTAYGGNYDSY 311
>sp|P43535|GCN20_YEAST Protein GCN20
Length = 752
Score = 214 bits (544), Expect = 3e-55
Identities = 106/254 (41%), Positives = 168/254 (66%)
Frame = +2
Query: 23 ARQAQSKEKTLKKMVDGGLTQKVIREKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLI 202
+++AQS+ K L+K+ + + ++K + F FP C ++ PP+IQ+Q+VSF Y N L+
Sbjct: 492 SQEAQSRIKKLEKLP---VLEPPEQDKTIDFKFPECDKLSPPIIQLQDVSFGYDENNLLL 548
Query: 203 YDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEI 382
D ++ V +D+R+ALVG NG GK+TLLK++ +L P G + R+ + RIG + QH +
Sbjct: 549 KD-VNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDS 607
Query: 383 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 562
+DL ++A++WM KSFP K +E R+ LG +G+TG + ++ LS GQ+ R+ FA L
Sbjct: 608 MDLTTSAVDWMSKSFPG-KTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCL 666
Query: 563 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 742
PH+L+LDEP+NHLD +D+L +A+ F GG+L+VSHD +I V +EIWV + G V
Sbjct: 667 NNPHILVLDEPSNHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVK 726
Query: 743 KWPGDIYSYKTSLI 784
++ G IY Y+ ++
Sbjct: 727 RFEGTIYDYRDYIL 740
Score = 53.1 bits (126), Expect = 8e-07
Identities = 64/222 (28%), Positives = 87/222 (39%), Gaps = 50/222 (22%)
Frame = +2
Query: 200 IYDNIDFGVDLDTRVALVGPNGAGKSTLLKLIAS-ELEPTDGLIRRHSKCRI-GRYHQHL 373
I N + R LVG NG GKSTLL+ ++ EL + H + + G + L
Sbjct: 214 ILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVPKHVSILHVEQELRGDDTKAL 273
Query: 374 HEILDLN---STALEWMMKSFPHIKEKDEMR----------KKLGR-------------- 472
+LD + L K +KE D +R KKL
Sbjct: 274 QSVLDADVWRKQLLSEEAKINERLKEMDVLRQEFEEDSLEVKKLDNEREDLDNHLIQISD 333
Query: 473 ------------------YGL---TGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLD 589
YGL T QQ P S S G R R+ A P +LLLD
Sbjct: 334 KLVDMESDKAEARAASILYGLGFSTEAQQQ-PTNSFSGGWRMRLSLARALFCQPDLLLLD 392
Query: 590 EPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEI 715
EP+N LD+ +I LA+ + + +L VSHD + VA +I
Sbjct: 393 EPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLNEVATDI 434
>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 839
Score = 188 bits (477), Expect = 2e-47
Identities = 97/230 (42%), Positives = 151/230 (65%)
Frame = +2
Query: 95 REKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGK 274
RE + F+FP + PPV+ + V+F Y KPL + N+DFG+D+D+R+ +VGPNG GK
Sbjct: 600 REYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGK 658
Query: 275 STLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKEKDEM 454
STLL L+ +L PT+G +R++ + +IG ++Q E L + T E++ + F ++ +D
Sbjct: 659 STLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGF-NLPYQDA- 716
Query: 455 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 634
RK LGR+GL I LS GQ+ R++FA LA P +L+LDEPTN+LD+E+ID+L
Sbjct: 717 RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALG 776
Query: 635 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLI 784
+AINE++G +++VSHD RLI ++WV + +V++ GD YK ++
Sbjct: 777 EAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVL 826
Score = 72.8 bits (177), Expect = 1e-12
Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 38/288 (13%)
Frame = +2
Query: 23 ARQAQSKEKTLKKMVDGGLTQKVIREKNLV---FSFPSCGEIPPPVIQVQNVS------F 175
A ++ ++K LKK +D + ++ N FS S E+ ++N S F
Sbjct: 245 AHLSKKEKKKLKKQMDYERQVESLKAANAAENDFSV-SQAEVSSRQAMLENASDIKLEKF 303
Query: 176 KYGANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLK---------------------L 292
A+ ++ N D + R LVGPNG GK+TLLK +
Sbjct: 304 SISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEV 363
Query: 293 IASELEPTDGLIRRHSK-CRIGRYHQHLHEILDL-NSTALEWMMKSFPHIKE------KD 448
+A E ++R +K R+ + L L+ + TA E + K + ++ +
Sbjct: 364 VADETPAVQAVLRADTKRLRLLEEEKRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEA 423
Query: 449 EMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDS 628
+ R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL +
Sbjct: 424 KARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIW 483
Query: 629 LADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
L + + + LL+VSHD + V +I D + + G+ ++K
Sbjct: 484 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFK 531
>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1
Length = 837
Score = 187 bits (474), Expect = 4e-47
Identities = 96/230 (41%), Positives = 151/230 (65%)
Frame = +2
Query: 95 REKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGK 274
+E + F+FP + PPV+ + V+F Y KPL + N+DFG+D+D+R+ +VGPNG GK
Sbjct: 598 KEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGK 656
Query: 275 STLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKEKDEM 454
STLL L+ +L PT+G +R++ + +IG ++Q E L + T E++ +SF ++ +D
Sbjct: 657 STLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSF-NLPYQDA- 714
Query: 455 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 634
RK LGR+GL I LS GQ+ R++FA LA P +L+LDEPTN+LD+E+ID+L
Sbjct: 715 RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALG 774
Query: 635 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLI 784
+AIN+++G +++VSHD RLI ++WV + V++ GD YK ++
Sbjct: 775 EAINDYKGAVIVVSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVL 824
Score = 72.8 bits (177), Expect = 1e-12
Identities = 75/288 (26%), Positives = 123/288 (42%), Gaps = 38/288 (13%)
Frame = +2
Query: 23 ARQAQSKEKTLKKMVDGGLTQKVIREKNLV---FSFPSCGEIPPPVIQVQNVS------F 175
A ++ ++K LKK +D + ++ N FS S E+ ++N S F
Sbjct: 243 ANLSKKEKKKLKKQMDYERQVESLKAANAAENDFSV-SQAEVSSRQAMLENASDIKLEKF 301
Query: 176 KYGANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLK---------------------L 292
A+ ++ N D + R LVGPNG GK+TLLK +
Sbjct: 302 SISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEV 361
Query: 293 IASELEPTDGLIRRHSK-CRIGRYHQHLHEILDL-NSTALEWMMKSFPHIKE------KD 448
+A E ++R +K R+ + L L+ + TA E + K + ++ +
Sbjct: 362 VADETPAVQAVLRADTKRLRLLEEERRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAEA 421
Query: 449 EMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDS 628
+ R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL +
Sbjct: 422 KARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIW 481
Query: 629 LADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
L + + + LL+VSHD + V +I D + + G+ ++K
Sbjct: 482 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFK 529
>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
(TNF-alpha-stimulated ABC protein)
Length = 845
Score = 186 bits (472), Expect = 6e-47
Identities = 96/230 (41%), Positives = 150/230 (65%)
Frame = +2
Query: 95 REKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGK 274
+E + F+FP + PPV+ + V+F Y KPL + N+DFG+D+D+R+ +VGPNG GK
Sbjct: 606 KEYTVRFTFPDPPPLSPPVLGLHGVTFGYQGQKPL-FKNLDFGIDMDSRICIVGPNGVGK 664
Query: 275 STLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKEKDEM 454
STLL L+ +L PT G +R++ + +IG ++Q E L + T E++ + F ++ +D
Sbjct: 665 STLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDA- 722
Query: 455 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 634
RK LGR+GL I LS GQ+ R++FA LA P +L+LDEPTN+LD+E+ID+L
Sbjct: 723 RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALG 782
Query: 635 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLI 784
+AINE++G +++VSHD RLI ++WV + +V++ GD YK ++
Sbjct: 783 EAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVL 832
Score = 68.6 bits (166), Expect = 2e-11
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Frame = +2
Query: 173 FKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLK--------------------- 289
F A+ ++ N D + R LVGPNG GK+TLLK
Sbjct: 309 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 368
Query: 290 LIASELEPTDGLIRRHSK-CRIGRYHQHLHEILDL-NSTALEWMMKSFPHIKE------K 445
++A E ++R +K ++ + L L+ + TA E + K + ++ +
Sbjct: 369 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAE 428
Query: 446 DEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETID 625
+ R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL +
Sbjct: 429 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 488
Query: 626 SLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
L + + + LL+VSHD + V +I D + + G+ ++K
Sbjct: 489 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFK 537
>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 (ATP-binding cassette 50)
Length = 807
Score = 186 bits (472), Expect = 6e-47
Identities = 96/230 (41%), Positives = 150/230 (65%)
Frame = +2
Query: 95 REKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGK 274
+E + F+FP + PPV+ + V+F Y KPL + N+DFG+D+D+R+ +VGPNG GK
Sbjct: 568 KEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGK 626
Query: 275 STLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKEKDEM 454
STLL L+ +L PT G +R++ + +IG ++Q E L + T E++ + F ++ +D
Sbjct: 627 STLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDA- 684
Query: 455 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 634
RK LGR+GL I LS GQ+ R++FA LA P +L+LDEPTN+LD+E+ID+L
Sbjct: 685 RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALG 744
Query: 635 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLI 784
+AINE++G +++VSHD RLI ++WV + +V++ GD YK ++
Sbjct: 745 EAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVL 794
Score = 68.9 bits (167), Expect = 1e-11
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Frame = +2
Query: 173 FKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLK--------------------- 289
F A+ ++ N D + R LVGPNG GK+TLLK
Sbjct: 271 FSISAHGKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 330
Query: 290 LIASELEPTDGLIRRHSK-CRIGRYHQHLHEILDL-NSTALEWMMKSFPHIKE------K 445
++A E ++R +K ++ + L L+ + TA E + K + ++ +
Sbjct: 331 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAE 390
Query: 446 DEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETID 625
+ R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL +
Sbjct: 391 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 450
Query: 626 SLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
L + + + LL+VSHD + V +I D + + G+ ++K
Sbjct: 451 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFK 499
>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1
Length = 807
Score = 185 bits (470), Expect = 1e-46
Identities = 96/230 (41%), Positives = 150/230 (65%)
Frame = +2
Query: 95 REKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGK 274
+E + F+FP + PPV+ + V+F Y KPL + N+DFG+D+D+R+ +VGPNG GK
Sbjct: 568 KEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPL-FKNLDFGIDMDSRICIVGPNGVGK 626
Query: 275 STLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEILDLNSTALEWMMKSFPHIKEKDEM 454
STLL L+ +L PT G +R++ + +IG ++Q E L + T E++ + F ++ +D
Sbjct: 627 STLLLLLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDA- 684
Query: 455 RKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLA 634
RK LGR+GL I LS GQ+ R++FA LA P +L+LDEPTN+LD+E+ID+L
Sbjct: 685 RKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALG 744
Query: 635 DAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYKTSLI 784
+AINE++G +++VSHD RLI ++WV + +V++ GD YK ++
Sbjct: 745 EAINEYKGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVL 794
Score = 67.4 bits (163), Expect = 4e-11
Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 29/229 (12%)
Frame = +2
Query: 173 FKYGANKPLIYDNIDFGVDLDTRVALVGPNGAGKSTLLK--------------------- 289
F A+ ++ N D + R LVGPNG GK+TLLK
Sbjct: 271 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 330
Query: 290 LIASELEPTDGLIRRHSK-CRIGRYHQHLHEILDL-NSTALEWMMKSFPHIKE------K 445
++A E ++R +K ++ + L L+ + TA + + K + ++ +
Sbjct: 331 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAADRLEKVYEELRATGAAAAE 390
Query: 446 DEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETID 625
+ R+ L G Q P + S G R R+ A P +L+LDEPTNHLDL +
Sbjct: 391 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 450
Query: 626 SLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
L + + + LL+VSHD + V +I D + + G+ ++K
Sbjct: 451 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFK 499
>sp|P63390|YHES_ECO57 Hypothetical ABC transporter ATP-binding protein yheS
sp|P63389|YHES_ECOLI Hypothetical ABC transporter ATP-binding protein yheS
Length = 637
Score = 142 bits (359), Expect = 8e-34
Identities = 85/250 (34%), Positives = 142/250 (56%)
Frame = +2
Query: 23 ARQAQSKEKTLKKMVDGGLTQKVIREKNLVFSFPSCGEIPPPVIQVQNVSFKYGANKPLI 202
A+QAQS+ K L++M L + FSF + +P P+++++ VS YG +I
Sbjct: 273 AKQAQSRIKMLERME---LIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDR--II 327
Query: 203 YDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRYHQHLHEI 382
D+I + +R+ L+G NGAGKSTL+KL+A EL P G I ++G + QH E
Sbjct: 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEY 387
Query: 383 LDLNSTALEWMMKSFPHIKEKDEMRKKLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAE 562
L + + ++ + + P E+ ++R LG +G G + + S G++ R++ A +
Sbjct: 388 LRADESPIQHLARLAPQELEQ-KLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446
Query: 563 GCPHMLLLDEPTNHLDLETIDSLADAINEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVT 742
P++LLLDEPTNHLDL+ +L +A+ EFEG L++VSHD L+ +++++ V
Sbjct: 447 QRPNLLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVE 506
Query: 743 KWPGDIYSYK 772
+ GD+ Y+
Sbjct: 507 PFDGDLEDYQ 516
Score = 67.0 bits (162), Expect = 5e-11
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Frame = +2
Query: 197 LIYDNIDFGVDLDTRVALVGPNGAGKSTLLKLIASELEPTDGLIRRHSKCRIGRYHQHLH 376
++ DN ++ +V LVG NG GKSTLL L+ +E+ G ++ +Q
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQ--- 71
Query: 377 EILDLNSTALEWMMKSFPHIKE--------------------------------KDEMRK 460
E L ALE+++ ++ +
Sbjct: 72 ETPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAAS 131
Query: 461 KLGRYGLTGGQQICPIKSLSDGQRCRIIFAWLAEGCPHMLLLDEPTNHLDLETIDSLADA 640
L G + Q P+ S G R R+ A +LLLDEPTNHLDL+ + L
Sbjct: 132 LLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191
Query: 641 INEFEGGLLLVSHDFRLIGRVAEEIWVCDHGAVTKWPGDIYSYK 772
+ ++G L+L+SHD + + ++I + ++ ++ G+ S++
Sbjct: 192 LKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFE 235
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,038,983
Number of Sequences: 369166
Number of extensions: 1820739
Number of successful extensions: 10296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9790
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)