Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L06
(782 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-lik... 219 5e-57
sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-lik... 218 1e-56
sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chrom... 213 4e-55
sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor 200 4e-51
sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial pr... 199 9e-51
sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675 90 8e-18
sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis prote... 81 4e-15
sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095 79 2e-14
sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis prote... 77 7e-14
sp|Q8DDQ1|UBIB_VIBVU Probable ubiquinone biosynthesis prote... 74 4e-13
>sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 647
Score = 219 bits (559), Expect = 5e-57
Identities = 113/221 (51%), Positives = 149/221 (67%), Gaps = 1/221 (0%)
Frame = +2
Query: 2 ERARQNADFMPVKQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEV 181
ER RQ+ADFMP+KQM K + +LG NWR+K F+E+PFAAASIGQVH A + +EV
Sbjct: 298 ERVRQSADFMPLKQMMKTLNNDLGPNWRDKLEYFEERPFAAASIGQVHLARMKG--GREV 355
Query: 182 AVKIQYPGVKRSIDSDFNNLMSLLRFVSALPPGLHANKAIEVAKRELAWECDYRREAQFG 361
A+KIQYPGV +SI+SD NNLM++L + LP GL I+V +RELA ECDY+REA
Sbjct: 356 AMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLIDVLRRELALECDYQREAACA 415
Query: 362 SWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLC 541
F D P F VP+++ EL + VLTTE V G LD+ + QEIR+ + ++ LC
Sbjct: 416 RKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQEIRNEICYNILVLC 475
Query: 542 LKELFEFRTMQTDPNWQISYLMLRKENI-LIDFGASREYQK 661
L+ELFEF MQTDPNW + ++ + L+DFGA+REY +
Sbjct: 476 LRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDR 516
>sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 645
Score = 218 bits (555), Expect = 1e-56
Identities = 108/221 (48%), Positives = 150/221 (67%), Gaps = 1/221 (0%)
Frame = +2
Query: 2 ERARQNADFMPVKQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEV 181
ER RQ+ADFMP+KQM K + +LG +WR+K F+E+PFAAASIGQVH A + +EV
Sbjct: 295 ERVRQSADFMPLKQMTKTLNSDLGPHWRDKLEYFEERPFAAASIGQVHLARMKG--GREV 352
Query: 182 AVKIQYPGVKRSIDSDFNNLMSLLRFVSALPPGLHANKAIEVAKRELAWECDYRREAQFG 361
A+KIQYPGV +SI+SD NNLM++L + LP GL I+V +REL ECDY+REA +
Sbjct: 353 AMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLIDVLRRELTLECDYQREAAYA 412
Query: 362 SWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLC 541
F + + P F VP+++ EL + VLTTE + G LD+ + QE+R+ + ++ LC
Sbjct: 413 KKFRELLKDHPFFYVPEIVDELCSPHVLTTELISGFPLDQAEGLSQEVRNEICYNILVLC 472
Query: 542 LKELFEFRTMQTDPNWQISYLMLRKENI-LIDFGASREYQK 661
L+ELFEF MQTDPNW + ++ + L+DFGA+REY +
Sbjct: 473 LRELFEFHVMQTDPNWSNFFYDPQQHKVALLDFGATREYDR 513
>sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chromosome III
Length = 755
Score = 213 bits (543), Expect = 4e-55
Identities = 112/225 (49%), Positives = 148/225 (65%), Gaps = 5/225 (2%)
Frame = +2
Query: 2 ERARQNADFMPVKQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEV 181
ER RQ+ADFMP+KQ+++ M GD+WREKF FD+KPFA ASIGQVH+A L + N V
Sbjct: 397 ERVRQSADFMPIKQVHRQMKDAFGDDWREKFEHFDDKPFACASIGQVHKAVLKDGRN--V 454
Query: 182 AVKIQYPGVKRSIDSDFNNLMSLLRFVSALPPGLHANKAIEVAKRELAWECDYRREAQFG 361
AVK+QYPGV IDSD +NL+S+L P G+ + + VA+REL ECDY REA+
Sbjct: 455 AVKVQYPGVAEGIDSDIDNLVSVLSVGGIFPKGMFLDAFVGVARRELKQECDYEREARAM 514
Query: 362 SWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLC 541
F + A+ VP+VI ELS+ +VLTTE V+G +D CV Q +RD++ + + LC
Sbjct: 515 KKFRELIADWQDVYVPEVIDELSSSRVLTTELVYGKPVDACVEEPQVVRDYIAGKFIELC 574
Query: 542 LKELFEFRTMQTDPNWQISYLMLRKEN-----ILIDFGASREYQK 661
LKE+F +R MQTDPNW +L + +L+DFGASR Y K
Sbjct: 575 LKEIFLWRFMQTDPNWSNFFLGKHPKTGEPRLVLLDFGASRAYGK 619
>sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor
Length = 501
Score = 200 bits (508), Expect = 4e-51
Identities = 106/218 (48%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Frame = +2
Query: 5 RARQNADFMPVKQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEVA 184
R + +A+ MP +Q+ KVM KELG NW+ KF +FD+ P AAASIGQVH A L P + V
Sbjct: 157 RVQNSANHMPQRQLEKVMAKELGANWKTKFSKFDKIPMAAASIGQVHAAEL--PSGQRVV 214
Query: 185 VKIQYPGVKRSIDSDFNNLMSLLRFVSALPPGLHANKAIEVAKRELAWECDYRREAQFGS 364
VKIQYPGVK SIDSD N+L+ LL S LP GL +K I A+ EL WECDY REA+
Sbjct: 215 VKIQYPGVKESIDSDLNSLLMLLTASSLLPKGLFLDKTIANARTELKWECDYNREARALQ 274
Query: 365 WFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLCL 544
F +DP F VP V PE +T+ ++T + G + K QE ++++ +MRLCL
Sbjct: 275 KFEALLKDDPAFEVPHVFPEYTTDNIITMTRMEGTEIMKLPKASQETKNFISENIMRLCL 334
Query: 545 KELFEFRTMQTDPNW-QISYLMLRKENILIDFGASREY 655
+E+ F+ MQTDPNW Y K+ L+DFGASR +
Sbjct: 335 EEIATFKYMQTDPNWANFLYNGRTKKIELLDFGASRPF 372
>sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial precursor
Length = 610
Score = 199 bits (505), Expect = 9e-51
Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 1/221 (0%)
Frame = +2
Query: 2 ERARQNADFMPVKQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEV 181
ER R A MP KQ+ +VMVK LG NW + EFD KP AAASIGQVHRA L++ + EV
Sbjct: 264 ERVRDGAHSMPEKQLEQVMVKNLGKNWMTHYSEFDRKPMAAASIGQVHRARLASN-HMEV 322
Query: 182 AVKIQYPGVKRSIDSDFNNLMSLLRFVSALPPGLHANKAIEVAKRELAWECDYRREAQFG 361
VK+QYPGV SIDSD NNL LL+ LP GL ++ A++EL WECDY REA F
Sbjct: 323 VVKVQYPGVMSSIDSDLNNLAYLLKASRILPKGLFLENSLAAARKELKWECDYEREAAFA 382
Query: 362 SWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLC 541
F ND F VP V E S V+T E++HGI+L K Q R+ +G + + C
Sbjct: 383 ERFGSLLKNDSDFKVPMVFREASGPSVITLEYLHGIALGK-QKYSQATRNHIGYLLTKQC 441
Query: 542 LKELFEFRTMQTDPNW-QISYLMLRKENILIDFGASREYQK 661
L+E+ E+ MQTDPNW Y K+ L+DFGAS EY +
Sbjct: 442 LREISEYHFMQTDPNWSNFLYNGKTKKIELLDFGASIEYDE 482
>sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675
Length = 488
Score = 89.7 bits (221), Expect = 8e-18
Identities = 63/178 (35%), Positives = 95/178 (53%), Gaps = 5/178 (2%)
Frame = +2
Query: 41 QMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEVAVKIQYPGVKRSI 220
+++K+ V+ELGD F F+E+PFA+ASI QVH A L + +EV VKIQ PG++R +
Sbjct: 143 EVHKLFVEELGDEPARLFASFEEEPFASASIAQVHYATLRS--GEEVVVKIQRPGIRRRV 200
Query: 221 DSDFNNLMSLLRFVSALPPG--LHANKAIEVAKRELAWECDYRREAQFGSWFADKFANDP 394
+D L + V G L A + LA E D+R EAQ + P
Sbjct: 201 AADLQILKRFAQTVELAKLGRRLSAQDVVADFADNLAEELDFRLEAQSMEAWVSHLHASP 260
Query: 395 I---FVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQMMRLCLKELFE 559
+ VP+V + +TE+VLT E VHGI +D ++ + D G ++++ L +FE
Sbjct: 261 LGKNIRVPQVHWDFTTERVLTMERVHGIRIDNAAAIRKAGFD--GVELVKALLFSVFE 316
>sp|Q87TH2|UBIB_VIBPA Probable ubiquinone biosynthesis protein ubiB
Length = 544
Score = 80.9 bits (198), Expect = 4e-15
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Frame = +2
Query: 56 MVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEVAVKIQYPGVKRSIDSDFN 235
M K LG F EFD KP A+ASI QVH A L + N+EV +K+ P ++ IDSD
Sbjct: 109 MEKALGGPLENWFTEFDIKPLASASIAQVHTARLKD-TNQEVVLKVIRPDIRPVIDSDLK 167
Query: 236 NLMSLLRFVSALPPGLHANKAIEVAK---RELAWECDYRREAQFGSWFADKFANDPIFVV 406
+ + R V+ P K +EV + + L E D RREA F V
Sbjct: 168 LMHRMARIVAGAMPEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFEGSEELYV 227
Query: 407 PKVIPELSTEQVLTTEFVHGISL 475
P+V P+ S E V+ +E ++GI +
Sbjct: 228 PEVFPDFSNETVMVSERIYGIQV 250
>sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095
Length = 567
Score = 78.6 bits (192), Expect = 2e-14
Identities = 69/219 (31%), Positives = 102/219 (46%), Gaps = 14/219 (6%)
Frame = +2
Query: 38 KQMNKVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEVAVKIQYPGVKRS 217
+Q V+ +EL E F +F+ P A+AS+GQVHRA L P + V VK+Q PG+
Sbjct: 107 RQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVL--PTGEAVVVKVQRPGLDSL 164
Query: 218 IDSDFNNLMSLLRFVSALPPG---LHANKAIEVAKRE----LAWECDYRREAQFGSWFAD 376
++ DF L LR PG L IE +E L E DY E + F
Sbjct: 165 LNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQ 224
Query: 377 KFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIRDWVGSQM-----MRLC 541
FA+ P VP++ + +T VLT E++ GI +D D++ + G + +C
Sbjct: 225 NFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVD-----DRQALETAGINLDLVIQTGIC 279
Query: 542 --LKELFEFRTMQTDPNWQISYLMLRKENILIDFGASRE 652
LK+L Q+DP+ + + + I DFG E
Sbjct: 280 AYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAE 318
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein ubiB
Length = 508
Score = 76.6 bits (187), Expect = 7e-14
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Frame = +2
Query: 50 KVMVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPP---NKEVAVKIQYPGVKRSI 220
+V+ + LG E F++FD KP A+AS+ QVH+A L P +EVAVK+ PG+ I
Sbjct: 102 QVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVI 161
Query: 221 DSDFNNLMSLLRFVSAL---PPGLHANKAIEVAKRELAWECDYRREAQFGSWFADKFAND 391
+ D + + +L +V L L + + + L E D EA S F
Sbjct: 162 EQDLSLMRTLAGWVEKLFADGKRLKpreVVAEFDKYLHDELDMMHEAANASQLRRNFKGS 221
Query: 392 PIFVVPKVIPELSTEQVLTTEFVHGI 469
+ +VP+V + S+ +VLT E++HGI
Sbjct: 222 DMLIVPEVFYDYSSREVLTLEWMHGI 247
>sp|Q8DDQ1|UBIB_VIBVU Probable ubiquinone biosynthesis protein ubiB
Length = 544
Score = 73.9 bits (180), Expect = 4e-13
Identities = 49/143 (34%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Frame = +2
Query: 56 MVKELGDNWREKFIEFDEKPFAAASIGQVHRAALSNPPNKEVAVKIQYPGVKRSIDSDFN 235
M + LG F +FD P A+ASI QVH A L N+EV +K+ P ++ ID+D
Sbjct: 109 MEQALGGPLETWFSDFDLVPLASASIAQVHTAKLKTT-NQEVVLKVIRPDIRPIIDADLK 167
Query: 236 NLMSLLRFVSALPPGLHANKAIEVAK---RELAWECDYRREAQFGSWFADKFANDPIFVV 406
+ + R V+ P K IEV + + L E D RREA F + V
Sbjct: 168 LMRRMARIVAKAMPEARRLKPIEVVREYEKTLLDELDLRREAANAIQLRRNFTDSEELYV 227
Query: 407 PKVIPELSTEQVLTTEFVHGISL 475
P+V P+ S E V+ +E ++GI +
Sbjct: 228 PEVYPDFSNETVMVSERIYGIQV 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,568,451
Number of Sequences: 369166
Number of extensions: 1838502
Number of successful extensions: 5244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5184
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)