Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L03
(379 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein associ... 40 0.002
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprote... 39 0.003
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associ... 35 0.041
sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein associ... 35 0.041
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 35 0.041
sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associ... 35 0.041
sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein associ... 35 0.041
sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associ... 35 0.041
sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associat... 35 0.041
sp|Q10163|YAU8_SCHPO Hypothetical protein C26A3.08 in chrom... 35 0.070
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB)
Length = 199
Score = 39.7 bits (91), Expect = 0.002
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTED 71
GFVL+RGE +VSL V+GPPP E+
Sbjct: 68 GFVLLRGENIVSLTVEGPPPPEE 90
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein associated protein B
(snRNP-B) (Sm protein B) (Sm-B) (SmB)
Length = 160
Score = 39.3 bits (90), Expect = 0.003
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTEDSA 77
G VL+RGE +VS+ VDGPPP +D +
Sbjct: 68 GLVLVRGEHIVSMTVDGPPPRDDDS 92
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B'
(snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
Length = 240
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB)
Length = 231
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 68 GLVLLRGENLVSMTVEGPPPKD 89
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) (SM11)
Length = 214
Score = 35.4 bits (80), Expect = 0.041
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTE 68
G VL+RGE LVS+ V+GPPP +
Sbjct: 51 GLVLLRGENLVSMTVEGPPPKD 72
>sp|Q10163|YAU8_SCHPO Hypothetical protein C26A3.08 in chromosome I
Length = 147
Score = 34.7 bits (78), Expect = 0.070
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 3 GFVLIRGEQLVSLNVDGPPPTEDSAK 80
G V++RGE +VSL+V GPPP + S +
Sbjct: 66 GLVILRGEFIVSLSVQGPPPMDPSMR 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,146,583
Number of Sequences: 369166
Number of extensions: 565476
Number of successful extensions: 1812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1811
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)