Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_L01
(180 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isofor... 112 2e-25
sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial ... 112 2e-25
sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondria... 112 2e-25
sp|P19482|ATPA2_BOVIN ATP synthase alpha chain liver isofor... 112 2e-25
sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondria... 111 6e-25
sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondria... 95 4e-20
sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondria... 94 7e-20
sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondria... 93 2e-19
sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondria... 93 2e-19
sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondria... 89 4e-18
>sp|P19483|ATPA1_BOVIN ATP synthase alpha chain heart isoform, mitochondrial precursor
Length = 553
Score = 112 bits (281), Expect = 2e-25
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+
Sbjct: 231 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 289
>sp|P15999|ATPA_RAT ATP synthase alpha chain, mitochondrial precursor
Length = 543
Score = 112 bits (281), Expect = 2e-25
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+
Sbjct: 221 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 279
>sp|Q03265|ATPA_MOUSE ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 112 bits (281), Expect = 2e-25
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+
Sbjct: 231 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 289
>sp|P19482|ATPA2_BOVIN ATP synthase alpha chain liver isoform, mitochondrial precursor
Length = 359
Score = 112 bits (281), Expect = 2e-25
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+
Sbjct: 231 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 289
>sp|P25705|ATPA_HUMAN ATP synthase alpha chain, mitochondrial precursor
Length = 553
Score = 111 bits (277), Expect = 6e-25
Identities = 55/59 (93%), Positives = 59/59 (100%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFNDG+DEKKKLYCIYVAIGQKRSTVAQLVKRL++ADAMKYTIVVSATASDAAPLQYL+
Sbjct: 231 RFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLA 289
>sp|P35381|ATPA_DROME ATP synthase alpha chain, mitochondrial precursor (Protein
bellwether)
Length = 552
Score = 95.1 bits (235), Expect = 4e-20
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
RFN+ DE KKLYCIYVAIGQKRSTVAQ+VKRL+++ AM Y+++VSATASDAAPLQYL+
Sbjct: 230 RFNEAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVIVSATASDAAPLQYLA 288
>sp|P37211|ATPA_NEUCR ATP synthase alpha chain, mitochondrial precursor
Length = 551
Score = 94.4 bits (233), Expect = 7e-20
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
R+N G+DE KKLYC+YVA+GQKRSTVAQLVK L DAMKY+IVV+ATAS+AAPLQYL+
Sbjct: 229 RWNSGSDEDKKLYCVYVAVGQKRSTVAQLVKTLEENDAMKYSIVVAATASEAAPLQYLA 287
>sp|P07251|ATPA_YEAST ATP synthase alpha chain, mitochondrial precursor
Length = 545
Score = 93.2 bits (230), Expect = 2e-19
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
R+N+G+DE KKLYC+YVA+GQKRSTVAQLV+ L DAMKY+I+V+ATAS+AAPLQYL+
Sbjct: 225 RWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLA 283
>sp|P49375|ATPA_KLULA ATP synthase alpha chain, mitochondrial precursor
Length = 548
Score = 92.8 bits (229), Expect = 2e-19
Identities = 42/59 (71%), Positives = 54/59 (91%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
R+N+GTDE KKLYC+YVA+GQKRSTVAQLV+ L DA+KY+I+V+ATAS+AAPLQY++
Sbjct: 228 RWNNGTDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDALKYSIIVAATASEAAPLQYIA 286
>sp|P24487|ATPA_SCHPO ATP synthase alpha chain, mitochondrial precursor
Length = 536
Score = 88.6 bits (218), Expect = 4e-18
Identities = 39/59 (66%), Positives = 54/59 (91%)
Frame = +3
Query: 3 RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLSNADAMKYTIVVSATASDAAPLQYLS 179
R+N+ +DE KKLYC+YVA+GQKRSTVAQLV++L D++KY+I+V+ATAS++APLQYL+
Sbjct: 216 RWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLA 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,583,706
Number of Sequences: 369166
Number of extensions: 219310
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)