Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K22
(745 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 427 e-119
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 427 e-119
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 427 e-119
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 427 e-119
sp|P02554|TBB_PIG Tubulin beta chain 427 e-119
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 427 e-119
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 426 e-119
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 426 e-119
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 425 e-119
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 424 e-118
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 427 bits (1099), Expect = e-119
Identities = 208/210 (99%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 427 bits (1098), Expect = e-119
Identities = 207/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 427 bits (1098), Expect = e-119
Identities = 207/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 427 bits (1098), Expect = e-119
Identities = 207/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 63 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 122
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 123 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 182
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 183 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 242
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 243 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 272
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 427 bits (1097), Expect = e-119
Identities = 206/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 427 bits (1097), Expect = e-119
Identities = 206/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 426 bits (1095), Expect = e-119
Identities = 206/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 426 bits (1095), Expect = e-119
Identities = 206/210 (98%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 425 bits (1093), Expect = e-119
Identities = 205/210 (97%), Positives = 209/210 (99%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKM+ TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMNDLVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 424 bits (1091), Expect = e-118
Identities = 205/210 (97%), Positives = 210/210 (100%)
Frame = +1
Query: 1 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 180
TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG
Sbjct: 218 TTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 277
Query: 181 SQQYRALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 360
SQQYRALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN
Sbjct: 278 SQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKN 337
Query: 361 SSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHW 540
SSYFVEWIPNNVKTAVCDIPPRGLKMS+TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHW
Sbjct: 338 SSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 397
Query: 541 YTGEGMDEMEFTEAESNMNDLVSEYQQYQD 630
YTGEGMDEMEFTEAESNMN+LVSEYQQYQD
Sbjct: 398 YTGEGMDEMEFTEAESNMNELVSEYQQYQD 427
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,918,143
Number of Sequences: 369166
Number of extensions: 1362979
Number of successful extensions: 4041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3882
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)