Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K13
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7T2P6|TIM23_BRARE Mitochondrial import inner membrane t... 46 2e-05
sp|O14925|TIM23_HUMAN Mitochondrial import inner membrane t... 43 2e-04
sp|O35093|TIM23_RAT Mitochondrial import inner membrane tra... 43 3e-04
sp|Q9WTQ8|TIM23_MOUSE Mitochondrial import inner membrane t... 41 8e-04
sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane t... 33 0.16
sp|O67178|YA88_AQUAE Hypothetical protein AQ_1088 31 0.78
sp|Q6N5Q9|LPXD_RHOPA UDP-3-O-[3-hydroxymyristoyl] glucosami... 29 3.0
sp|Q7Z3B4|NUP54_HUMAN Nucleoporin p54 (54 kDa nucleoporin) 29 3.0
sp|Q5KZL2|NORM_GEOKA Probable multidrug resistance protein ... 28 5.1
sp|Q7M4F4|CUD1_SCHGR Endocuticle structural glycoprotein Sg... 28 5.1
>sp|Q7T2P6|TIM23_BRARE Mitochondrial import inner membrane translocase subunit Tim23
Length = 208
Score = 46.2 bits (108), Expect = 2e-05
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 19 LISQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAATTTGLIHGFGSLSW 198
+++ + + A++A +LG + LLY+ + + ED++ + A T TG++ F S
Sbjct: 116 ILNMVTRQGASWANTLGSVALLYSVFGVAIEKARGAEDDLNTVAAGTLTGMV--FKSTGG 173
Query: 199 QRAI-KGGGVGLAVGCAIGAFSNYDKLK 279
+ + +GG +GLA+ ++N+D LK
Sbjct: 174 LKGVARGGLIGLAMSGLYALYNNWDHLK 201
>sp|O14925|TIM23_HUMAN Mitochondrial import inner membrane translocase subunit Tim23
Length = 209
Score = 43.1 bits (100), Expect = 2e-04
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 LISQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAATTTGLIHG-FGSLS 195
+++ + + A +A +LG + LLY+ I+ + ED++ + A T TG+++ G L
Sbjct: 116 ILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGL- 174
Query: 196 WQRAIKGGGVGLAVGCAIGAFSNYDKLKSS 285
+ +GG GL + ++N++ +K S
Sbjct: 175 -RGIARGGLTGLTLTSLYALYNNWEHMKGS 203
>sp|O35093|TIM23_RAT Mitochondrial import inner membrane translocase subunit Tim23
Length = 209
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 LISQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAATTTGLIHG-FGSLS 195
+++ + + A +A +LG + LLY+ I+ + ED+ + A T TG+++ G L
Sbjct: 116 ILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDFNTVAAGTMTGMLYKCTGGL- 174
Query: 196 WQRAIKGGGVGLAVGCAIGAFSNYDKLKSS 285
+ +GG GL + ++N++ +K S
Sbjct: 175 -RGIARGGLAGLTLTSVYALYNNWEHMKGS 203
>sp|Q9WTQ8|TIM23_MOUSE Mitochondrial import inner membrane translocase subunit Tim23
Length = 209
Score = 41.2 bits (95), Expect = 8e-04
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 LISQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAATTTGLIHG-FGSLS 195
+++ + + A +A +LG + LLY+ I+ + ED++ + A T TG+++ G L
Sbjct: 116 ILNMVTRQGALWANTLGSLALLYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGL- 174
Query: 196 WQRAIKGGGVGLAVGCAIGAFSNYDKLKSS 285
+ +GG GL + ++N+ +K S
Sbjct: 175 -RGIARGGLAGLTLTSLYALYNNWVHMKGS 203
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
Length = 207
Score = 33.5 bits (75), Expect = 0.16
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 25 SQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAA---TTTGLIHGFGSLS 195
+ + K S + A++ G IG++YAG + ++ SL+ ++++ N + A T GL + G
Sbjct: 116 TDMGKKSYSSAKNFGYIGMIYAGVECVIE-SLRAKNDIYNGVTAGFFTGAGLAYKAGP-- 172
Query: 196 WQRAIKGGGVGLAVGCAIGAF 258
Q A+ GG A AI +
Sbjct: 173 -QAALMGGAGFAAFSAAIDLY 192
>sp|O67178|YA88_AQUAE Hypothetical protein AQ_1088
Length = 761
Score = 31.2 bits (69), Expect = 0.78
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Frame = +1
Query: 19 LISQIAKSSATFAQSLGGIGLLY------AGCDSILHYSLKQEDEVTNILAATTTGLIHG 180
L+SQ++++S AQ L +GLLY + +L +LK D V + L A L +
Sbjct: 57 LLSQVSENSLNSAQGLSDLGLLYFFLGRVEDAERVLKKALKFSD-VDDALYARLGALYYS 115
Query: 181 FGSLS-----WQRAI 210
G L W+RA+
Sbjct: 116 QGKLEEAQHYWERAL 130
>sp|Q6N5Q9|LPXD_RHOPA UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
Length = 360
Score = 29.3 bits (64), Expect = 3.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 70 GIGLLYAGCDSILHYSLKQEDEVT-NILAATTTGLIHGFGSLSWQRAIKGGGVGLAVGCA 246
G+G +++H + K EDEVT LA + G G++ A+ GV + C
Sbjct: 113 GVGAPGIAPTAVIHETAKLEDEVTVEPLAVIGPDVEIGSGTVIGAGAVIAAGVKIGRDCD 172
Query: 247 IGAFSN 264
IGA S+
Sbjct: 173 IGAGSH 178
>sp|Q7Z3B4|NUP54_HUMAN Nucleoporin p54 (54 kDa nucleoporin)
Length = 507
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Frame = +1
Query: 25 SQIAKSSATFAQSLGGIGLLYAGCDSILHYSLKQEDEVTNILAATTT---GLIHGFGSLS 195
S A ++A A GG G S +S T + T G GFG+ +
Sbjct: 12 SGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTGLFGGTQNKGFGFGTGFGTTT 71
Query: 196 WQRAIKGGGVGLAVGCAIGAFSNYDKLKSSFRGM 297
G G GL G G F+ + +++ G+
Sbjct: 72 GTST--GLGTGLGTGLGFGGFNTQQQQQTTLGGL 103
>sp|Q5KZL2|NORM_GEOKA Probable multidrug resistance protein norM (Multidrug-efflux
transporter)
Length = 455
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 133 EVTNILAATTTGLIHGFGSLS---WQRAIKGGGVGLAVGCAI 249
+V++ +AA G + G+ ++ W + GVGL +GCA+
Sbjct: 368 QVSDAIAAPIQGALRGYKEVNAVFWSALLAYWGVGLPLGCAL 409
>sp|Q7M4F4|CUD1_SCHGR Endocuticle structural glycoprotein SgAbd-1
Length = 184
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 254 APIAHPTARPTPPPLIALCQERLPNP*IKPVVVAARMLVTSSS 126
+P A P PPP + + LP P +P +V AR + +SS
Sbjct: 29 SPPASRAPPPPPPPRPVVPSQPLPAPAPQPAIVPARTIPQASS 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,108,429
Number of Sequences: 369166
Number of extensions: 661103
Number of successful extensions: 2322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2311
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)