Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K12
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 89 1e-17
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 89 2e-17
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 86 2e-16
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 85 3e-16
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 77 5e-14
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 75 2e-13
sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 (Immunogl... 36 0.16
sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 (Myb-rela... 33 1.1
sp|P53899|YNP5_YEAST Hypothetical 31.5 kDa protein in YGP1-... 33 1.4
sp|Q00140|VTER_ICHV1 Probable DNA packaging protein (Termin... 32 2.4
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 89.4 bits (220), Expect = 1e-17
Identities = 42/77 (54%), Positives = 51/77 (66%)
Frame = +2
Query: 263 SLSSDLPTNVNSKEITDVSVQQKKLNRCFQCHKKVNLMGFNCRCGNVFCTSHRYSEAHNC 442
S S P++ S+E + KK NRCF C KKV L GF+CRCGN+FC HRYS+ HNC
Sbjct: 128 SPSVSQPSSSQSEEKAPELPKPKK-NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNC 186
Query: 443 QYDYREEAQEEIRKANP 493
YDY+ EA +IRK NP
Sbjct: 187 PYDYKAEAAAKIRKENP 203
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 89.0 bits (219), Expect = 2e-17
Identities = 42/77 (54%), Positives = 50/77 (64%)
Frame = +2
Query: 263 SLSSDLPTNVNSKEITDVSVQQKKLNRCFQCHKKVNLMGFNCRCGNVFCTSHRYSEAHNC 442
S S P+ S+E + KK NRCF C KKV L GF+CRCGN+FC HRYS+ HNC
Sbjct: 128 SPSVSQPSTSQSEEKAPELPKPKK-NRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNC 186
Query: 443 QYDYREEAQEEIRKANP 493
YDY+ EA +IRK NP
Sbjct: 187 PYDYKAEAAAKIRKENP 203
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 85.5 bits (210), Expect = 2e-16
Identities = 46/146 (31%), Positives = 64/146 (43%)
Frame = +2
Query: 56 PKPCKSXXXXXXXXXXXXRCSKCFKNLEKESANRCFAETTKIPHENDKKLATLMDTKCII 235
PK C CSKC++++ A+ N K T I
Sbjct: 16 PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEI 75
Query: 236 KEALCESNKSLSSDLPTNVNSKEITDVSVQQKKLNRCFQCHKKVNLMGFNCRCGNVFCTS 415
+ + S S SS T + + RC C+KKV + GF CRCG+ FC +
Sbjct: 76 TQGVLGSGSSSSS---TRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGT 132
Query: 416 HRYSEAHNCQYDYREEAQEEIRKANP 493
HRY E+H CQ+D++ A+E I KANP
Sbjct: 133 HRYPESHECQFDFKGVAREAIAKANP 158
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 84.7 bits (208), Expect = 3e-16
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Frame = +2
Query: 56 PKPCKSXXXXXXXXXXXXRCSKCFKNLEKESANRCFAETTKIPHENDKKLATLMDTKCII 235
PK C + CSKC+++L E A K +N KL + II
Sbjct: 16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVA---KAAVKNSLKLPSCS----II 68
Query: 236 KEALCESNKSLSSDLPTNVNSKEITDVSVQQKK-----------LNRCFQCHKKVNLMGF 382
+ + L T V + E + V V ++ NRCF C+KKV +MGF
Sbjct: 69 APGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGF 128
Query: 383 NCRCGNVFCTSHRYSEAHNCQYDYREEAQEEIRKANP 493
C+CG+ FC SHRY E H C +D++E ++ I KANP
Sbjct: 129 KCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANP 165
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 77.4 bits (189), Expect = 5e-14
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Frame = +2
Query: 257 NKSLSSDLPTNVNSKEITDVSVQQK------KLNRCFQCHKKVNLMGFNCRCGNVFCTSH 418
N + ++PT ++E + + + + NRC C K+V L GF CRCG FC SH
Sbjct: 67 NYAAELEIPTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSH 126
Query: 419 RYSEAHNCQYDYREEAQEEIRKANP 493
RY E H C +D++ +EEI KANP
Sbjct: 127 RYPEVHGCTFDFKSAGREEIAKANP 151
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 75.5 bits (184), Expect = 2e-13
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 335 LNRCFQCHKKVNLMGFNCRCGNVFCTSHRYSEAHNCQYDYREEAQEEIRKANP 493
+NRC +C K+V L GF CRCG++FC HRYS+ H C YDY+ A++ I + NP
Sbjct: 102 VNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNP 154
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 (Immunoglobulin mu-binding protein 2)
(SMUBP-2) (Glial factor 1) (GF-1)
Length = 993
Score = 35.8 bits (81), Expect = 0.16
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 269 SSDLPTNVNSKEITDVSVQQKKLNRCFQCHKKVNLMGFNCR-CGNVFCTSHRYSEAHNCQ 445
++DLPT + + + +V+ +C V +G C+ C +C SH E H C
Sbjct: 874 ATDLPTEEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGCG 933
Query: 446 YDYREEAQEEIRK 484
R A++ I +
Sbjct: 934 ERARAHARQRISR 946
>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4)
Length = 282
Score = 33.1 bits (74), Expect = 1.1
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 161 FAETTKIPHENDK-KLATLMDTK--CIIKEALCESNKSLSSDLPTNVNSKEITDVSVQQK 331
F E+ P +++K + T + K C ++E + N L LP +V+ + S
Sbjct: 164 FHESISFPGKSEKISMLTFKEEKDECPVQEKFPDLNLELRISLPDDVDRLQGHGKSTTP- 222
Query: 332 KLNRCFQCHKKVNLMGFNCRCGNVFC 409
RCF+C + + G CRCG + C
Sbjct: 223 ---RCFKCSLGM-INGMECRCGRMRC 244
>sp|P53899|YNP5_YEAST Hypothetical 31.5 kDa protein in YGP1-YCK2 intergenic region
Length = 274
Score = 32.7 bits (73), Expect = 1.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 344 CFQCHKKVNLMGFNCR-CGNVFCTSHRYSEAHNCQYDYREEAQEEIRKA 487
C C ++++ + F+C C FC++HR E H+C++ E + K+
Sbjct: 18 CAYC-RQLDFLPFHCSFCNEDFCSNHRLKEDHHCRWLLEHEEVHKTEKS 65
>sp|Q00140|VTER_ICHV1 Probable DNA packaging protein (Terminase)
Length = 852
Score = 32.0 bits (71), Expect = 2.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 335 LNRCFQCHKKVNLMGFNCRCGNVFCTSHRYSEAHNCQYDYREEAQEEIRKANP 493
+N+ F+C +L G C C VFC +H D E QE I P
Sbjct: 468 INQRFKCDGHAHLPGMMCPCSAVFCPTH---------IDLNESIQELINNITP 511
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,894,394
Number of Sequences: 369166
Number of extensions: 1584111
Number of successful extensions: 3702
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3699
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)