Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K10
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 182 4e-46
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 181 6e-46
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 181 6e-46
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 179 4e-45
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 178 5e-45
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 177 1e-44
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 177 1e-44
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 177 1e-44
sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E) 176 3e-44
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 175 5e-44
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 182 bits (461), Expect = 4e-46
Identities = 90/156 (57%), Positives = 114/156 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH+KGNVGFVFT GDL V+D +L K++APA+ A+AP+
Sbjct: 60 MMRKAIRGHLENNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPL 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML
Sbjct: 120 HVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
I PF YGL + Q+Y++GS +SP+ LDI +D+ F
Sbjct: 180 ISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKF 215
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 181 bits (460), Expect = 6e-46
Identities = 94/156 (60%), Positives = 114/156 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL ML
Sbjct: 120 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
I PF YGL IQQ+Y+NGS YSP+ LDITED + + F
Sbjct: 180 ISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRF 215
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 181 bits (460), Expect = 6e-46
Identities = 91/156 (58%), Positives = 114/156 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + N L KL PH+KGNVGFVFT GDL V+D +L K++APA+A A+AP+
Sbjct: 60 MMRKAIRGHLENNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPL 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML
Sbjct: 120 PVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
I PF YGL I Q+Y++GS +SP+ LDI +D+ F
Sbjct: 180 ISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKF 215
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 179 bits (453), Expect = 4e-45
Identities = 94/156 (60%), Positives = 112/156 (71%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + N L KL PH+KGNVGFVFT DL V+D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 120 DVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
I PF +GL IQQ+Y+NGS YSP+ LDITED + F
Sbjct: 180 ISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARF 215
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 178 bits (452), Expect = 5e-45
Identities = 90/156 (57%), Positives = 114/156 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 120 DVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
I PF +GL IQQ+++NGS Y+P+ LDITE+ + + F
Sbjct: 180 ISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRF 215
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 177 bits (449), Expect = 1e-44
Identities = 89/152 (58%), Positives = 112/152 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 120 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDI 457
I PF +GL IQQ+++NGS Y+P+ LDITE+ +
Sbjct: 180 ISPFSFGLVIQQVFDNGSIYNPEVLDITEETL 211
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 177 bits (449), Expect = 1e-44
Identities = 94/159 (59%), Positives = 114/159 (71%), Gaps = 3/159 (1%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L +L PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQL---LQ 352
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA L L
Sbjct: 120 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLN 179
Query: 353 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGF 469
ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F
Sbjct: 180 MLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRF 218
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 177 bits (448), Expect = 1e-44
Identities = 90/149 (60%), Positives = 110/149 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 120 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITE 448
I PF +GL IQQ+++NGS YSP+ LDITE
Sbjct: 180 ISPFSFGLIIQQVFDNGSIYSPEVLDITE 208
>sp|P14869|RLA0_MOUSE 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 176 bits (445), Expect = 3e-44
Identities = 89/149 (59%), Positives = 110/149 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP
Sbjct: 60 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC 119
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML
Sbjct: 120 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLN 179
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITE 448
I PF +GL IQQ+++NGS Y+P+ LDITE
Sbjct: 180 ISPFSFGLIIQQVFDNGSIYNPEVLDITE 208
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 175 bits (443), Expect = 5e-44
Identities = 88/152 (57%), Positives = 111/152 (73%)
Frame = +2
Query: 2 MMKFVITKNKATNPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPV 181
MM+ I + NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP
Sbjct: 51 MMRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPC 110
Query: 182 SVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLK 361
V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL ML
Sbjct: 111 EVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLN 170
Query: 362 IFPFQYGLKIQQIYENGSCYSPDALDITEDDI 457
I PF +GL IQQ+++NGS Y+P+ LDITE+ +
Sbjct: 171 ISPFSFGLVIQQVFDNGSIYNPEVLDITEETL 202
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,952,947
Number of Sequences: 369166
Number of extensions: 961984
Number of successful extensions: 2503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2488
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)