Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K09
(550 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55935|RS9_DROME 40S ribosomal protein S9 299 3e-81
sp|P29314|RS9_RAT 40S ribosomal protein S9 >gi|52783339|sp|... 296 2e-80
sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 288 6e-78
sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B 273 2e-73
sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A 271 6e-73
sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B (S13) (YS11... 270 1e-72
sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A (S13) (YS11... 269 3e-72
sp|P52810|RS9_PODAN 40S ribosomal protein S9 (S7) 269 4e-72
sp|P14132|RS9_DICDI 40S ribosomal protein S9 (40S ribosomal... 249 4e-66
sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 212 4e-55
>sp|P55935|RS9_DROME 40S ribosomal protein S9
Length = 195
Score = 299 bits (765), Expect = 3e-81
Identities = 148/177 (83%), Positives = 161/177 (90%)
Frame = +1
Query: 7 RIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELLTL 186
RIP V+ KTY TPRRP+EK RLD E+K+IG +GLRNKREVWRVKY LAKIRKAARELLTL
Sbjct: 5 RIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
Query: 187 DEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLARSI 366
DEKD KRLF+GNALLRRLV+IGVL E RMKLDYVLGLKIEDFLERRLQTQVFK GLA+SI
Sbjct: 65 DEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSI 124
Query: 367 HHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARK 537
HHARVLI QRHIRVRKQ+VN+PSF+VRLDS KHIDFS KSP+GGGR GRVKRKN +K
Sbjct: 125 HHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
>sp|P29314|RS9_RAT 40S ribosomal protein S9
sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9
sp|P46781|RS9_HUMAN 40S ribosomal protein S9
Length = 194
Score = 296 bits (759), Expect = 2e-80
Identities = 147/170 (86%), Positives = 159/170 (93%)
Frame = +1
Query: 28 KTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELLTLDEKDPKR 207
KTY TPRRPFEK RLD E+KLIG +GLRNKREVWRVK+TLAKIRKAARELLTLDEKDP+R
Sbjct: 11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70
Query: 208 LFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLARSIHHARVLI 387
LFEGNALLRRLV+IGVL E +MKLDY+LGLKIEDFLERRLQTQVFK GLA+SIHHARVLI
Sbjct: 71 LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130
Query: 388 LQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARK 537
QRHIRVRKQ+VN+PSFIVRLDS KHIDFS +SPYGGGR GRVKRKNA+K
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9
Length = 189
Score = 288 bits (737), Expect = 6e-78
Identities = 143/179 (79%), Positives = 160/179 (89%)
Frame = +1
Query: 1 MSRIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELL 180
M+R+ V K +PRRPFEKERLD E+KLIG FGL+NKREVWRVKYTLAK+RKAARELL
Sbjct: 1 MARLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELL 60
Query: 181 TLDEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLAR 360
TL++KDPKRLFEGNALLRRLVKIGVL E +MKLDYVLGLK+EDFLERRLQTQVFK GLA+
Sbjct: 61 TLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAK 120
Query: 361 SIHHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARK 537
SIHHAR+LI Q HIRVR+Q+V+VPSFIVRLDS KHIDFS +SPYGGGR GRVKR+ RK
Sbjct: 121 SIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B
Length = 192
Score = 273 bits (699), Expect = 2e-73
Identities = 134/182 (73%), Positives = 152/182 (83%)
Frame = +1
Query: 1 MSRIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELL 180
M P+ KTY PRRPFE RLDAE+KL G +GLRNK E+WRV TL+KIR+AARELL
Sbjct: 1 MPSAPRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELL 60
Query: 181 TLDEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLAR 360
TLDEKDPKRLFEGNA++RRLV++G+L E RMKLDYVL L+IEDFLERRLQTQVFK GLA+
Sbjct: 61 TLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAK 120
Query: 361 SIHHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARKE 540
SIHHARVLI QRHIRV KQ+VNVPSF+VRLD+ KHIDF+ SPYGGGR GR KRK R +
Sbjct: 121 SIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQ 180
Query: 541 TE 546
E
Sbjct: 181 QE 182
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A
Length = 191
Score = 271 bits (694), Expect = 6e-73
Identities = 133/180 (73%), Positives = 151/180 (83%)
Frame = +1
Query: 1 MSRIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELL 180
M P+ KTY PRRPFE RLDAE+KL G +GLRNK E+WRV TL+KIR+AARELL
Sbjct: 1 MPSAPRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELL 60
Query: 181 TLDEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLAR 360
TLDEKDPKRLFEGNA++RRLV++G+L E RMKLDYVL L+IEDFLERRLQTQVFK GLA+
Sbjct: 61 TLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAK 120
Query: 361 SIHHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARKE 540
SIHHARVLI QRHIRV KQ+VNVPSF+VRLD+ KHIDF+ SPYGGGR GR KRK R +
Sbjct: 121 SIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQ 180
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)
Length = 195
Score = 270 bits (691), Expect = 1e-72
Identities = 128/182 (70%), Positives = 157/182 (86%)
Frame = +1
Query: 1 MSRIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELL 180
M R P+ Y KTY+TP+RP+E RLDAE+KL G FGL+NKRE++R+ + L+KIR+AAR+LL
Sbjct: 1 MPRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLL 60
Query: 181 TLDEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLAR 360
T DEKDPKRLFEGNAL+RRLV++GVLSED+ KLDYVL LK+EDFLERRLQTQV+K GLA+
Sbjct: 61 TRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAK 120
Query: 361 SIHHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARKE 540
S+HHARVLI QRHI V KQ+VN+PSF+VRLDS KHIDF+ SP+GG R GRV R+NA ++
Sbjct: 121 SVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARK 180
Query: 541 TE 546
E
Sbjct: 181 AE 182
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)
Length = 197
Score = 269 bits (688), Expect = 3e-72
Identities = 127/182 (69%), Positives = 157/182 (86%)
Frame = +1
Query: 1 MSRIPQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELL 180
M R P+ Y KTY+TP+RP+E RLDAE+KL G FGL+NK+E++R+ + L+KIR+AAR+LL
Sbjct: 1 MPRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLL 60
Query: 181 TLDEKDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLAR 360
T DEKDPKRLFEGNAL+RRLV++GVLSED+ KLDYVL LK+EDFLERRLQTQV+K GLA+
Sbjct: 61 TRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAK 120
Query: 361 SIHHARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARKE 540
S+HHARVLI QRHI V KQ+VN+PSF+VRLDS KHIDF+ SP+GG R GRV R+NA ++
Sbjct: 121 SVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARK 180
Query: 541 TE 546
E
Sbjct: 181 AE 182
>sp|P52810|RS9_PODAN 40S ribosomal protein S9 (S7)
Length = 190
Score = 269 bits (687), Expect = 4e-72
Identities = 133/174 (76%), Positives = 151/174 (86%)
Frame = +1
Query: 13 PQVYGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELLTLDE 192
P+ Y KT PRRPFE RLD+E+KL+G +GLRNKREVWRV TL+KIR+AARELLTLDE
Sbjct: 3 PRSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDE 62
Query: 193 KDPKRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLARSIHH 372
KDPKRLFEGNAL+RRLV++GVL E RMKLDYVL LK EDFLERRLQT V+K GLA+SIHH
Sbjct: 63 KDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHH 122
Query: 373 ARVLILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNAR 534
ARVLI QRHIRV KQ+VNVPSF+VRLDS KHIDF+ SP+GGGR GRV+RK A+
Sbjct: 123 ARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKAK 176
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 (40S ribosomal protein 1024)
(Vegetative-specific protein V12)
Length = 185
Score = 249 bits (635), Expect = 4e-66
Identities = 121/174 (69%), Positives = 146/174 (83%)
Frame = +1
Query: 22 YGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELLTLDEKDP 201
Y KT TPRRPFEKER+DAE+K++G FGL+NK EVWRV+Y LAKIRKAARELL LDEKDP
Sbjct: 5 YSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDP 64
Query: 202 KRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLARSIHHARV 381
KR+FEG+ALLRRL K+GV+ E + KLDY+L LK++DF+ERRLQT VFK+GLA+SIHHARV
Sbjct: 65 KRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARV 124
Query: 382 LILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKRKNARKET 543
LI RHIRV KQ+VNVPSF+VR++S KH+ +S SP GGR GR RK A+ +
Sbjct: 125 LIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNS 178
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9
Length = 190
Score = 212 bits (540), Expect = 4e-55
Identities = 107/175 (61%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Frame = +1
Query: 22 YGKTYATPRRPFEKERLDAEMKLIGMFGLRNKREVWRVKYTLAKIRKAARELLTLDEKDP 201
+ + + PRRPFEKERLD EMKL G +GLR KRE+WRV TL+K+R+ AR LLTL E P
Sbjct: 7 FNRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHP 66
Query: 202 KRLFEGNALLRRLVKIGVLSEDRMKLDYVLGLKIEDFLERRLQTQVFKSGLARSIHHARV 381
+RL EG+A++RR G L ED+ KLDYVL L + D LERRLQT VFK GLA+S+HH+RV
Sbjct: 67 RRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRV 126
Query: 382 LILQRHIRVRKQMVNVPSFIVRLDSGKHIDFSSKSPYGGGRAGRVKR--KNARKE 540
LI QRHI V KQ+V +PSFIVR+ S HI F+ SP+G GR GRVKR +NA K+
Sbjct: 127 LIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVKRNAAKK 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,564,965
Number of Sequences: 369166
Number of extensions: 1343689
Number of successful extensions: 4297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4272
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)