Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K06
(539 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 309 2e-84
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 309 3e-84
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 308 5e-84
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 308 5e-84
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 308 7e-84
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 243 2e-64
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 243 3e-64
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 241 8e-64
sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 216 2e-56
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 205 6e-53
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 309 bits (792), Expect = 2e-84
Identities = 136/179 (75%), Positives = 167/179 (93%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQN +IATK+PSSDVLVFDYTKHP+KP+P+G CQPDLRL+GHQKEGYG
Sbjct: 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWNP +GYLLSASDD+TIC+WDIN +P++ R+IDA +IFTGH++VVEDV+WHLLHE +
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSVADD++LMIWDTR + T++PS +VDAH+AEVNC+SFNP+SE+ILATGSAD+TVALW
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Score = 61.6 bits (148), Expect = 1e-09
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 326
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVN 467
+ I SV++D + +W +V N + A E N
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 428
Score = 57.8 bits (138), Expect = 2e-08
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Frame = +3
Query: 126 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 305
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 317
Query: 306 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 452
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 453 SAEVNCISFNPFSEYILATGSADRTVALW 539
+A+++ S+NP +I+ + S D + +W
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 309 bits (791), Expect = 3e-84
Identities = 137/179 (76%), Positives = 167/179 (93%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+G C PDLRL+GHQKEGYG
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYG 182
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWNP SG+LLSASDD+TIC+WDI+ P++ +++DA +IFTGH++VVEDVSWHLLHE +
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSVADD++LMIWDTR++ T++PS SVDAH+AEVNC+SFNP+SE+ILATGSAD+TVALW
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Score = 58.5 bits (140), Expect = 1e-08
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Frame = +3
Query: 126 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 305
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 313
Query: 306 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVD----------AH 452
H + V W +E I S DR+L +WD ++ P + D H
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 453 SAEVNCISFNPFSEYILATGSADRTVALW 539
+A+++ S+NP +++ + S D + +W
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 57.4 bits (137), Expect = 2e-08
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSVTN--RPSQSVD 446
+ + SV++D + +W ++ N P SVD
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 308 bits (789), Expect = 5e-84
Identities = 137/179 (76%), Positives = 165/179 (92%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+G C PDLRL+GHQKEGYG
Sbjct: 122 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 181
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWN SG+LLSASDD+T+C+WDIN P++ +I+DA +IFTGHS+VVEDV+WHLLHE +
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSVADD++LMIWDTR++ T++PS VDAH+AEVNC+SFNP+SE+ILATGSAD+TVALW
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Score = 57.8 bits (138), Expect = 2e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 381
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 461
+ + SV++D + IW ++ N V E
Sbjct: 382 NPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELE 421
Score = 56.6 bits (135), Expect = 4e-08
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Frame = +3
Query: 126 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 305
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHTF 312
Query: 306 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 452
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372
Query: 453 SAEVNCISFNPFSEYILATGSADRTVALW 539
+A+++ S+NP +++ + S D + +W
Sbjct: 373 TAKISDFSWNPNEPWVICSVSEDNIMQIW 401
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 308 bits (789), Expect = 5e-84
Identities = 137/179 (76%), Positives = 165/179 (92%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+G C PDLRL+GHQKEGYG
Sbjct: 122 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 181
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWN SG+LLSASDD+T+C+WDIN P++ +I+DA +IFTGHS+VVEDV+WHLLHE +
Sbjct: 182 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 241
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSVADD++LMIWDTR++ T++PS VDAH+AEVNC+SFNP+SE+ILATGSAD+TVALW
Sbjct: 242 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 300
Score = 59.3 bits (142), Expect = 6e-09
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 381
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 461
+ + SV++D + IW ++ N V A E
Sbjct: 382 NPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTASELE 421
Score = 56.6 bits (135), Expect = 4e-08
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 11/149 (7%)
Frame = +3
Query: 126 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 305
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHTF 312
Query: 306 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 452
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372
Query: 453 SAEVNCISFNPFSEYILATGSADRTVALW 539
+A+++ S+NP +++ + S D + +W
Sbjct: 373 TAKISDFSWNPNEPWVICSVSEDNIMQIW 401
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 308 bits (788), Expect = 7e-84
Identities = 137/179 (76%), Positives = 166/179 (92%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+G C PDLRL+GHQKEGYG
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYG 182
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWNP SG+LLSASDD+TIC+WDI+ P+ +++DA +IFTGH++VVEDVSWHLLHE +
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSVADD++LMIWDTR++ T++PS SVDAH+AEVNC+SFNP+SE+ILATGSAD+TVALW
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Score = 58.5 bits (140), Expect = 1e-08
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Frame = +3
Query: 126 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 305
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 313
Query: 306 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVD----------AH 452
H + V W +E I S DR+L +WD ++ P + D H
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 453 SAEVNCISFNPFSEYILATGSADRTVALW 539
+A+++ S+NP +++ + S D + +W
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 57.4 bits (137), Expect = 2e-08
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSVTN--RPSQSVD 446
+ + SV++D + +W ++ N P SVD
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 243 bits (620), Expect = 2e-64
Identities = 108/179 (60%), Positives = 143/179 (79%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
HDGEVNRARY+PQNP IIATK+ S++V VFDY+KHP+KP +G C PDLRL+GH EGYG
Sbjct: 124 HDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYG 183
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSW+ + G+LLS SDD+ IC+WDIN +P++ + ++A+ IF H VVEDV+WHL HE++
Sbjct: 184 LSWSQFKQGHLLSGSDDSHICLWDINATPKN-KALEAMQIFKVHEGVVEDVAWHLRHEYL 242
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSV DD+ L +WD RT +P QSV AH +EVNC++FNPF+E+++ATGS D+TV L+
Sbjct: 243 FGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLF 301
Score = 65.5 bits (158), Expect = 8e-11
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P N ++AT S V +FD K + L H++E +
Sbjct: 272 HQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------ISTALHTLDCHKEEVFQ 322
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ WNPK L S + +WD++ +Q DA L I GH+S + D SW
Sbjct: 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSW 382
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSV 419
+ + + SVA+D L IW ++
Sbjct: 383 NPCEDWVVASVAEDNILQIWQMAENI 408
Score = 56.2 bits (134), Expect = 5e-08
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Frame = +3
Query: 138 QPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHS 317
+P + HQ E L++NP + + S D T+ ++D+ ++I AL H
Sbjct: 264 KPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDL------RKISTALHTLDCHK 317
Query: 318 SVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVDA----------HSAEV 464
V V W+ +E I S R+LM+WD +R P + D H++++
Sbjct: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377
Query: 465 NCISFNPFSEYILATGSADRTVALW 539
+ S+NP ++++A+ + D + +W
Sbjct: 378 SDFSWNPCEDWVVASVAEDNILQIW 402
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 243 bits (619), Expect = 3e-64
Identities = 108/179 (60%), Positives = 143/179 (79%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
HDGEVNRARY+PQNP IIATK+ +++V VFDY+KHP+KP +G C PDL+L+GH EGYG
Sbjct: 124 HDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYG 183
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSW+ + G+LLS SDD IC+WDIN +P++ + +DA IF H VVEDV+WHL HE++
Sbjct: 184 LSWSKFKQGHLLSGSDDAQICLWDINATPKN-KSLDAQQIFKAHEGVVEDVAWHLRHEYL 242
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSV DD+ L+IWD R+ ++P QSV AHS EVNC++FNPF+E+++ATGS D+TV L+
Sbjct: 243 FGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLF 301
Score = 67.4 bits (163), Expect = 2e-11
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P N ++AT S V +FD K L H++E +
Sbjct: 272 HSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------LSTALHTFDSHKEEVFQ 322
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 341
+ WNPK L S + +WD++ +Q + DA L I GH+S + D SW
Sbjct: 323 VGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSW 382
Query: 342 HLLHEHIFGSVADDRQLMIWDTRTSV 419
+ + + SVA+D L IW ++
Sbjct: 383 NPCEDWVISSVAEDNILQIWQMAENI 408
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/190 (20%), Positives = 83/190 (43%), Gaps = 11/190 (5%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+G V + ++ + + +L++D A +P + H E
Sbjct: 226 HEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSAS-------KPVQSVVAHSMEVNC 278
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
L++NP + + S D T+ ++D+ +++ AL F H V V W+ +E I
Sbjct: 279 LAFNPFNEWVVATGSTDKTVKLFDL------RKLSTALHTFDSHKEEVFQVGWNPKNETI 332
Query: 363 FGSVADDRQLMIWD--------TRTSVTNRPSQSV---DAHSAEVNCISFNPFSEYILAT 509
S R+LM+WD T + P + + H+++++ S+NP ++++++
Sbjct: 333 LASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISS 392
Query: 510 GSADRTVALW 539
+ D + +W
Sbjct: 393 VAEDNILQIW 402
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 241 bits (615), Expect = 8e-64
Identities = 112/179 (62%), Positives = 136/179 (75%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+GEVNRARY+PQ IIATKSP +DV +FDY KH A P N P +RLKGH KEGYG
Sbjct: 87 HEGEVNRARYMPQKSNIIATKSPHADVYIFDYLKHSAVPRDNTF-NPLIRLKGHTKEGYG 145
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
LSWNP + G +LSASDD T+C WDIN + + A +F GH SVVEDV+WH+LH+ +
Sbjct: 146 LSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHESVVEDVAWHVLHDGV 205
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSV DD++L+IWD RTS P +DAHSAEVNC++FNP+SE+ILATGSAD+TVALW
Sbjct: 206 FGSVGDDKKLLIWDVRTST---PGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALW 261
Score = 60.8 bits (146), Expect = 2e-09
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLK-----GHQ 167
H EVN + P + I+AT S V ++D +LR+K H+
Sbjct: 232 HSAEVNCLAFNPYSEFILATGSADKTVALWDLR--------------NLRMKLHSFESHR 277
Query: 168 KEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVV 326
E + + W+P L S+ D + +WD++ DQ DA L I GH++ +
Sbjct: 278 DEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKI 337
Query: 327 EDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 461
D SW+ + SV++D L +W ++ N + A E
Sbjct: 338 SDFSWNPNEPWVVCSVSEDNILQVWQMADNIYNEVDEETPADVVE 382
Score = 53.1 bits (126), Expect = 4e-07
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 11/140 (7%)
Frame = +3
Query: 153 LKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVED 332
+ H E L++NP L + S D T+ +WD+ R+ R+ L F H +
Sbjct: 229 IDAHSAEVNCLAFNPYSEFILATGSADKTVALWDL----RNLRM--KLHSFESHRDEIFQ 282
Query: 333 VSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AHSAEVNCISF 479
V W +E I S D++L +WD ++ ++ + H+A+++ S+
Sbjct: 283 VQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSW 342
Query: 480 NPFSEYILATGSADRTVALW 539
NP +++ + S D + +W
Sbjct: 343 NPNEPWVVCSVSEDNILQVW 362
>sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1
Length = 412
Score = 216 bits (551), Expect = 2e-56
Identities = 105/179 (58%), Positives = 128/179 (71%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H GEV+RARY+P NP IIA++ PS DV +FDYTKHP++P +P LRLKGH+ EGYG
Sbjct: 118 HPGEVHRARYMPHNPFIIASRGPSDDVYIFDYTKHPSEPKDTKF-RPQLRLKGHEGEGYG 176
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 362
+SW+ R G+LL+A DD IC WDIN + I S F GHSS EDVS+H LH +
Sbjct: 177 MSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFV 236
Query: 363 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
FGSV DDR+L +WD R S +P + H+AEVNCI+FNPFSEYILATGS D+TVALW
Sbjct: 237 FGSVGDDRKLNLWDLRQS---KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALW 292
Score = 46.6 bits (109), Expect = 4e-05
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H EVN + P + I+AT S V ++D K LK H E +
Sbjct: 263 HTAEVNCITFNPFSEYILATGSVDKTVALWDMRNMRKKM---------YTLKHHNDEIFQ 313
Query: 183 LSWNPKRSGYLLSASDDNTICMWDIN---------TSPRDQRIIDALSIFTGHSSVVEDV 335
+S++P L S+ D+ + +WDI+ + D + + I GH+ V D
Sbjct: 314 VSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTGKVADF 373
Query: 336 SWHLLHEHIFGSVADDRQLMIWDTRTSVTN 425
SW+ S + L +W+ S+ +
Sbjct: 374 SWNPNRPWTICSSDEFNALQVWEVSNSLVS 403
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 13/147 (8%)
Frame = +3
Query: 138 QPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHS 317
+P L GH E +++NP L + S D T+ +WD+ R+ R + H+
Sbjct: 255 KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDM----RNMR--KKMYTLKHHN 308
Query: 318 SVVEDVSWHLLHEHIFGSVADDRQLMIWDTR-----TSVTNRPSQSVD--------AHSA 458
+ VS+ +E + S D ++++WD +S + S SV H+
Sbjct: 309 DEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTG 368
Query: 459 EVNCISFNPFSEYILATGSADRTVALW 539
+V S+NP + + + + +W
Sbjct: 369 KVADFSWNPNRPWTICSSDEFNALQVW 395
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 205 bits (521), Expect = 6e-53
Identities = 93/178 (52%), Positives = 129/178 (72%)
Frame = +3
Query: 6 DGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGL 185
DGEVNRAR +PQ PT++ K+ +V +FDY KH AK + C PDLRL GH KEGYGL
Sbjct: 116 DGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSE-CDPDLRLVGHDKEGYGL 174
Query: 186 SWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIF 365
SW+P + GYLLS S D IC+WD++ +P+D ++++A+ ++ GH S + DVSWH+ +E++F
Sbjct: 175 SWSPFKEGYLLSGSQDQKICLWDVSATPQD-KVLNAMFVYEGHESAIADVSWHMKNENLF 233
Query: 366 GSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADRTVALW 539
GS +D +L+IWDTR TN+ V H EVN +SFNPF+E++LAT S+D TVAL+
Sbjct: 234 GSAGEDGRLVIWDTR---TNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALF 288
Score = 67.4 bits (163), Expect = 2e-11
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Frame = +3
Query: 3 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 182
H+ EVN + P N ++AT S S V +FD K L P + H+ E +
Sbjct: 259 HEREVNYLSFNPFNEWVLATASSDSTVALFDLRK---------LNAPLHVMSSHEGEVFQ 309
Query: 183 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA---------LSIFTGHSSVVEDV 335
+ W+P L S+ +D + +WD+N +Q I+ L GH + + D
Sbjct: 310 VEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDF 369
Query: 336 SWHLLHEHIFGSVADDRQLMIWDTRTSV 419
+W+ + SVA+D L +W S+
Sbjct: 370 AWNKNEPWVIASVAEDNSLQVWQMAESI 397
Score = 62.0 bits (149), Expect = 9e-10
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Frame = +3
Query: 150 RLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVE 329
++K H++E LS+NP L +AS D+T+ ++D+ +++ L + + H V
Sbjct: 255 QVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDL------RKLNAPLHVMSSHEGEVF 308
Query: 330 DVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDA-------------HSAEVNC 470
V W HE + S +DR+LM+WD + +DA H A+++
Sbjct: 309 QVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISD 368
Query: 471 ISFNPFSEYILATGSADRTVALW 539
++N +++A+ + D ++ +W
Sbjct: 369 FAWNKNEPWVIASVAEDNSLQVW 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,420,290
Number of Sequences: 369166
Number of extensions: 1507978
Number of successful extensions: 5826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5230
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)