Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K04
(610 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 366 e-101
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 365 e-101
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 365 e-101
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 364 e-101
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 363 e-100
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 363 e-100
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 362 e-100
sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain 362 e-100
sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta) 360 1e-99
sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin) 360 2e-99
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 366 bits (940), Expect = e-101
Identities = 176/202 (87%), Positives = 182/202 (90%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 365 bits (938), Expect = e-101
Identities = 175/202 (86%), Positives = 182/202 (90%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP
Sbjct: 2 REIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 365 bits (936), Expect = e-101
Identities = 172/202 (85%), Positives = 183/202 (90%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEA+GGKYVP
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RA+LVDLEPGTMDSVRAGPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD++R
Sbjct: 62 RAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M+T+SVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 364 bits (935), Expect = e-101
Identities = 175/202 (86%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIG+KFWEVISDEHGIDPTG YHGDSDLQLERINVYYNEATGGKYVP
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 363 bits (932), Expect = e-100
Identities = 175/202 (86%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPF QIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 363 bits (931), Expect = e-100
Identities = 174/202 (86%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTG+YHGDSDLQL+RINVYYNEA+GGKYVP
Sbjct: 2 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAE CDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDETFCID
Sbjct: 182 PYNATLSVHQLVENTDETFCID 203
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 362 bits (929), Expect = e-100
Identities = 172/202 (85%), Positives = 182/202 (90%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVH+QAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQL+RI+VYYNEATGGKYVP
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RA+LVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|Q9D6F9|TBB4_MOUSE Tubulin beta-4 chain
Length = 444
Score = 362 bits (928), Expect = e-100
Identities = 173/202 (85%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YVP
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREE+PDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|P04350|TBB4_HUMAN Tubulin beta-4 chain (Tubulin 5 beta)
Length = 444
Score = 360 bits (925), Expect = 1e-99
Identities = 172/202 (85%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVHLQAGQCGNQIG+KFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG YVP
Sbjct: 2 REIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RAVLVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVD+VLD+VR
Sbjct: 62 RAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ K+REE+PDR+M TFSVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKMREEFPDRIMNTFSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 360 bits (924), Expect = 2e-99
Identities = 170/202 (84%), Positives = 181/202 (89%)
Frame = +3
Query: 3 REIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 182
REIVH+QAGQCGNQIG+KFWE+ISDEHGIDPTG YHGDSDLQLERINVYYNEA+GGKYVP
Sbjct: 2 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 61
Query: 183 RAVLVDLEPGTMDSVRAGPFGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDIVR 362
RA+LVDLEPGTMDSVR+GPFGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELVDSVLD+VR
Sbjct: 62 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVR 121
Query: 363 KEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVE 542
KEAESCDCLQGFQ KIREEYPDR+M T+SVVPSPKVSDTVVE
Sbjct: 122 KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVE 181
Query: 543 PYNATLSVHQLVENTDETFCID 608
PYNATLSVHQLVENTDET+CID
Sbjct: 182 PYNATLSVHQLVENTDETYCID 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,257,120
Number of Sequences: 369166
Number of extensions: 1256865
Number of successful extensions: 4085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)