Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K02
(547 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondria... 144 1e-34
sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondr... 144 1e-34
sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:g... 142 4e-34
sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondr... 140 2e-33
sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferas... 72 1e-12
sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferas... 62 9e-10
sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinot... 62 9e-10
sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinot... 55 9e-08
sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor... 30 3.8
sp|P51693|APLP1_HUMAN Amyloid-like protein 1 precursor (APL... 30 5.0
>sp|P50442|GATM_RAT Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 144 bits (363), Expect = 1e-34
Identities = 68/134 (50%), Positives = 93/134 (69%)
Frame = +1
Query: 1 RLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDM 180
R+H+++F DP MHIDATF + PG ++ NP+ + +KAGW IV P P D
Sbjct: 290 RVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDH 349
Query: 181 YEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWT 360
MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G+ +IKV+ + ++GGG HCWT
Sbjct: 350 PLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWT 409
Query: 361 SDVRRKGTLENYFN 402
DVRR+GTL++YF+
Sbjct: 410 CDVRRRGTLQSYFD 423
>sp|Q9D964|GATM_MOUSE Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 144 bits (363), Expect = 1e-34
Identities = 68/134 (50%), Positives = 93/134 (69%)
Frame = +1
Query: 1 RLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDM 180
R+H+++F DP MHIDATF + PG ++ NP+ + +KAGW IV P P D
Sbjct: 290 RVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPTPVIPDDH 349
Query: 181 YEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWT 360
MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G+ +IKV+ + ++GGG HCWT
Sbjct: 350 PLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKVNIRNANSLGGGFHCWT 409
Query: 361 SDVRRKGTLENYFN 402
DVRR+GTL++YF+
Sbjct: 410 CDVRRRGTLQSYFD 423
>sp|P50441|GATM_PIG Glycine amidinotransferase (L-arginine:glycine amidinotransferase)
(Transamidinase) (AT)
Length = 386
Score = 142 bits (359), Expect = 4e-34
Identities = 67/134 (50%), Positives = 92/134 (68%)
Frame = +1
Query: 1 RLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDM 180
R+H+++F DP MHIDATF + PG ++ NP+ + +KAGW IV P P D
Sbjct: 253 RVHIISFKDPNPMHIDATFNIIGPGLVLSNPDRPCHQIDLFKKAGWTIVTPPIPVIPDDH 312
Query: 181 YEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWT 360
MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G+ +IK+ + ++GGG HCWT
Sbjct: 313 PLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGISTIKISIRNANSLGGGFHCWT 372
Query: 361 SDVRRKGTLENYFN 402
DVRR+GTL++YF+
Sbjct: 373 CDVRRRGTLQSYFD 386
>sp|P50440|GATM_HUMAN Glycine amidinotransferase, mitochondrial precursor
(L-arginine:glycine amidinotransferase) (Transamidinase)
(AT)
Length = 423
Score = 140 bits (354), Expect = 2e-33
Identities = 66/134 (49%), Positives = 92/134 (68%)
Frame = +1
Query: 1 RLHLLNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDM 180
R+H+++F DP MHIDATF + PG ++ NP+ + +KAGW I+ P P D
Sbjct: 290 RVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDH 349
Query: 181 YEGMSYKWLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWT 360
MS KWLSMNVL+LDEKRV+V+ EV + KMFE +G+ +IKV+ + ++GGG HCWT
Sbjct: 350 PLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWT 409
Query: 361 SDVRRKGTLENYFN 402
DVRR+GTL++Y +
Sbjct: 410 CDVRRRGTLQSYLD 423
>sp|Q54258|STRB1_STRGA Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 348
Score = 71.6 bits (174), Expect = 1e-12
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +1
Query: 40 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK-WLSMN 216
H+D+T ++PG ++ NP VN W+ V P+ D + W+ MN
Sbjct: 227 HVDSTIVPLRPGLVLVNPARVNDDNMPDFLRSWQTVVCPELVDIGFTGDKPHCSVWIGMN 286
Query: 217 VLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLENY 396
+LV+ +V++R+ G+ K+ E G+ + + H +GGG HC T DVRR G+LE Y
Sbjct: 287 LLVVRPDLAVVDRRQTGLIKVLEKHGVDVLPLQLTHSRTLGGGFHCATLDVRRTGSLETY 346
>sp|P08078|STRB1_STRGR Inosamine-phosphate amidinotransferase I (Aminocyclitol
amidinotransferase) (ADT)
Length = 347
Score = 62.0 bits (149), Expect = 9e-10
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +1
Query: 40 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK-WLSMN 216
H+D+T ++PG ++ NP VN W+ + P+ D + W+ MN
Sbjct: 227 HVDSTIVPLRPGLVLTNPSRVNDENMPDFLRSWENITCPELVDIGFTGDKPHCSVWIGMN 286
Query: 217 VLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRR 375
+LV+ +V++R+ + ++ E GM + + H +GGG HC T DVRR
Sbjct: 287 LLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLTHSRTLGGGFHCATLDVRR 339
>sp|Q54264|STRB2_STRGA Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 319
Score = 62.0 bits (149), Expect = 9e-10
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Frame = +1
Query: 40 HIDATFFTVKPGYLIENPEVVNPYAEHLEK--AGWKIVKGPKPADRSDMYEGM-SYKWLS 210
H D + PG ++ NPE V+ AEH+ WK + P+ D + S W
Sbjct: 198 HGDFAVVPLGPGLILVNPERVD--AEHIPPFLRTWKRIVCPELVDPGPPDGAVHSSGWGG 255
Query: 211 MNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRRKGTLE 390
N+LV+ V+V++R+ + ++ E+ G+ + + H A+G G H T DVRR GTLE
Sbjct: 256 SNILVVRPGLVIVDRRQADLMRVLENNGIDVLPLQLTHARALGSGFHRVTVDVRRTGTLE 315
Query: 391 NY 396
+Y
Sbjct: 316 SY 317
>sp|P29780|STRB2_STRGR Putative inosamine-phosphate amidinotransferase II (Aminocyclitol
amidinotransferase) (ADT)
Length = 349
Score = 55.5 bits (132), Expect = 9e-08
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Frame = +1
Query: 40 HIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGMSYK------ 201
HID+T ++PG ++ NP V W+ ++ P A G+ Y
Sbjct: 228 HIDSTLVPLRPGLVLVNPARVTDDNLPGVLRTWQRIECPALA-------GLGYAGDVPHC 280
Query: 202 --WLSMNVLVLDEKRVLVEKREVGMHKMFESIGMQSIKVDFGHCFAVGGGLHCWTSDVRR 375
W+ M++LV+ V+V+ R + ++ E G+ + + H +GGG H T D+RR
Sbjct: 281 STWIGMSLLVVRPGLVVVDSRHRELMRVLERHGVDVLPLKLTHARMLGGGFHGVTLDIRR 340
Query: 376 KGTLENY 396
G LE Y
Sbjct: 341 TGALETY 347
>sp|Q6C7D0|TFB3_YARLI RNA polymerase II transcription factor B subunit 3 (RNA polymerase
II transcription factor B p38 subunit) (RNA polymerase
II transcription factor B 38 kDa subunit)
Length = 346
Score = 30.0 bits (66), Expect = 3.8
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Frame = +1
Query: 13 LNFHDPYAMHIDATFFTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGM 192
LN ++ Y I+ + FT+ G E + + ++ +I+ K D D YE
Sbjct: 97 LNDYNAYLEKIEDSIFTLLNGTADEKDALTKEIEAYEKEHKAEIIANNKLRDEEDKYEQQ 156
Query: 193 SYKWLSMN-----VLVLDEKRVLVEKREVGMHKMFESI 291
W+ ++ ++E+R E +E ++ +
Sbjct: 157 KEDWMKEQRKANYLMAVEEQRAAQEDKEAAKRELVHQL 194
>sp|P51693|APLP1_HUMAN Amyloid-like protein 1 precursor (APLP) (APLP-1) [Contains: C30]
Length = 650
Score = 29.6 bits (65), Expect = 5.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 58 FTVKPGYLIENPEVVNPYAEHLEKAGWKIVKGPKPADRSDMYEGM 192
+ V+P E E V P + H K+ P+P D D+Y GM
Sbjct: 256 YFVEPPQAEEEEETVPPPSSHTLAVVGKVTPTPRPTDGVDIYFGM 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,252,675
Number of Sequences: 369166
Number of extensions: 1346130
Number of successful extensions: 3791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3786
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)