Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J21
(585 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O10300|VP47_NPVOP Viral transcription regulator p47 29 7.5
sp|O14106|YEJ6_SCHPO Hypothetical protein C31G5.06 in chrom... 29 7.5
>sp|O10300|VP47_NPVOP Viral transcription regulator p47
Length = 399
Score = 29.3 bits (64), Expect = 7.5
Identities = 24/96 (25%), Positives = 41/96 (42%)
Frame = +2
Query: 155 DILFTQPYKFL*LLVNEVTLKYMKSLVTLYYYSTDEFSQCESQNCKLLLTIEKIKHTSIQ 334
++LF +F + N T SL YY ++F+ ES + L+ + I
Sbjct: 273 NLLFATDVEFY-MRANHFTFYVYNSLKFYYYCLKNKFA-FESNDKMLMFLLYTIVSLEWF 330
Query: 335 THNHINSTTIKKCCCLKPYKATNQSIPNSSRAAACN 442
H+NS T++K P + + + + RAA N
Sbjct: 331 NKGHLNSFTLEKSELYNPLELATRRLNSIKRAAQQN 366
>sp|O14106|YEJ6_SCHPO Hypothetical protein C31G5.06 in chromosome I
Length = 145
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 275 ESQNCKLLLTIEKIKHTSIQTHNHINSTTIKKCCCLKP 388
ES LL I +K TS Q H H N I + C +P
Sbjct: 17 ESLQDSLLKEISSLKETSTQNHLHCNDIKILQDCLRRP 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,411,850
Number of Sequences: 369166
Number of extensions: 882321
Number of successful extensions: 1790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1790
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)