Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J12
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A (eIF4A... 374 e-103
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eI... 373 e-103
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I (eI... 373 e-103
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (eI... 373 e-103
sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A... 369 e-102
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (e... 369 e-102
sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eI... 368 e-101
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (e... 366 e-101
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A... 360 4e-99
sp|P10081|IF4A_YEAST Eukaryotic initiation factor 4A (eIF4A... 350 2e-96
>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 403
Score = 374 bits (960), Expect = e-103
Identities = 186/267 (69%), Positives = 223/267 (83%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
ME G IE+ + +V ++FDDMNL+E+LLRGIY YGFEKPSAIQQRA++P + G DVIAQA
Sbjct: 15 MEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQA 74
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATFS+AILQ+ID + E QAL+LAPTRELA QI +V++ALG+YM S+ACIG
Sbjct: 75 QSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIG 134
Query: 377 GTRVQEDVGNLENGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIH 556
GT V+ED LE+G HV+VGTPGRV DMI R L+T IK+FVLDEADEMLSRGFK+QI
Sbjct: 135 GTNVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQ 194
Query: 557 SVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEED 736
V + + D Q++LLSATMPPDVLEV+R FMR PV ILVKKEELTLEGI+QFYVNV +E+
Sbjct: 195 DVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQEN 254
Query: 737 YKFETLTDLYETLTITQAVIFCNTRRK 817
+K TL DLY+TL+ITQ+VIFCNTRRK
Sbjct: 255 WKLGTLCDLYDTLSITQSVIFCNTRRK 281
>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 373 bits (958), Expect = e-103
Identities = 188/268 (70%), Positives = 224/268 (83%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
ME G IE+N+ ++ +SFDDMNL E LLRGIYAYGFEKPSAIQQRA+LP I+G+DVIAQA
Sbjct: 17 MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA 76
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ+I++ QALVLAPTRELA+QI KV++ALGDYMGA +ACIG
Sbjct: 77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 136
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ +V L+ H+IVGTPGRV DM+ R L IKMFVLDEADEMLSRGFK+QI
Sbjct: 137 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 196
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + +TQ+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E
Sbjct: 197 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 256
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 257 EWKLDTLCDLYETLTITQAVIFINTRRK 284
>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 373 bits (958), Expect = e-103
Identities = 188/268 (70%), Positives = 224/268 (83%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
ME G IE+N+ ++ +SFDDMNL E LLRGIYAYGFEKPSAIQQRA+LP I+G+DVIAQA
Sbjct: 17 MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA 76
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ+I++ QALVLAPTRELA+QI KV++ALGDYMGA +ACIG
Sbjct: 77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 136
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ +V L+ H+IVGTPGRV DM+ R L IKMFVLDEADEMLSRGFK+QI
Sbjct: 137 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 196
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + +TQ+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E
Sbjct: 197 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 256
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 257 EWKLDTLCDLYETLTITQAVIFINTRRK 284
>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 398
Score = 373 bits (958), Expect = e-103
Identities = 188/268 (70%), Positives = 224/268 (83%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
ME G IE+N+ ++ +SFDDMNL E LLRGIYAYGFEKPSAIQQRA+LP I+G+DVIAQA
Sbjct: 9 MEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQA 68
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ+I++ QALVLAPTRELA+QI KV++ALGDYMGA +ACIG
Sbjct: 69 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 128
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ +V L+ H+IVGTPGRV DM+ R L IKMFVLDEADEMLSRGFK+QI
Sbjct: 129 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 188
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + +TQ+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E
Sbjct: 189 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 248
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 249 EWKLDTLCDLYETLTITQAVIFINTRRK 276
>sp|P47943|IF4A_SCHPO Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 392
Score = 369 bits (948), Expect = e-102
Identities = 177/261 (67%), Positives = 225/261 (86%)
Frame = +2
Query: 35 IETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQAQSGTGK 214
IETNY++V ++FDDMNLK +LLRGIYAYGFE+PSAIQQRA++P + DV+AQAQSGTGK
Sbjct: 10 IETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGK 69
Query: 215 TATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRVQE 394
TATFS+++LQ+ID + + QAL+LAPTRELA+QI KV++ALGD M + +ACIGGT V++
Sbjct: 70 TATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
Query: 395 DVGNLENGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQFI 574
D+ L+ GVHV+VGTPGRV+DMI+R L T++++MFVLDEADEMLSRGFK+QI+ + Q +
Sbjct: 130 DMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLL 189
Query: 575 EHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFETL 754
Q+VLLSATMP DVLEVT KFMR P++ILVKK+ELTLEGI+QFYV V +E++K +TL
Sbjct: 190 PPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTL 249
Query: 755 TDLYETLTITQAVIFCNTRRK 817
DLYET+T+TQAVIFCNTRRK
Sbjct: 250 CDLYETVTVTQAVIFCNTRRK 270
>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
sp|Q5R4X1|IF4A2_PONPY Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 407
Score = 369 bits (946), Expect = e-102
Identities = 183/268 (68%), Positives = 224/268 (83%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
M+ G IE+N+ ++ ++FDDMNLKE LLRGIYAYGFEKPSAIQQRA++P I+G+DVIAQA
Sbjct: 18 MDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQA 77
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ++++ E QALVLAPTRELA+QI KVI+ALGDYMGA +ACIG
Sbjct: 78 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 137
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ ++ L+ H++VGTPGRV DM+ R L IKMFVLDEADEMLSRGFK+QI
Sbjct: 138 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQI 197
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV E
Sbjct: 198 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVERE 257
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 258 EWKLDTLCDLYETLTITQAVIFLNTRRK 285
>sp|Q5R5F5|IF4A1_PONPY Eukaryotic initiation factor 4A-I (eIF4A-I) (eIF-4A-I)
Length = 406
Score = 368 bits (944), Expect = e-101
Identities = 186/268 (69%), Positives = 222/268 (82%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
ME G IE+N+ ++ +S DDMNL E LLRGIYAYGFEKPSAIQQRA+L I+G+DVIAQA
Sbjct: 17 MEPEGVIESNWNEIVDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQA 76
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ+I++ QALVLAPTRELA+QI KV++ALGDYMGA +ACIG
Sbjct: 77 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 136
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ +V L+ H+IVGTPGRV DM+ R L IKMFVLDEADEMLSRGFK+QI
Sbjct: 137 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQI 196
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + +TQ+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGIRQFY+NV E
Sbjct: 197 YDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 256
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 257 EWKLDTLCDLYETLTITQAVIFINTRRK 284
>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II (eIF4A-II) (eIF-4A-II)
Length = 408
Score = 366 bits (939), Expect = e-101
Identities = 182/268 (67%), Positives = 223/268 (83%), Gaps = 1/268 (0%)
Frame = +2
Query: 17 MENPGEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQA 196
M+ G IE+N+ ++ ++FDDMNLKE LLRGIYAYGFEKPSAIQQRA++P I+G+DVIAQA
Sbjct: 19 MDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQA 78
Query: 197 QSGTGKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIG 376
QSGTGKTATF+++ILQ++++ E QALVLAPTRELA+QI KVI+ALGDYMGA +ACIG
Sbjct: 79 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 138
Query: 377 GTRVQEDVGNLE-NGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQI 553
GT V+ ++ L+ H++VGTPGRV DM+ R L IKMFVLDEAD MLSRGFK+QI
Sbjct: 139 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQI 198
Query: 554 HSVIQFIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEE 733
+ + Q + Q+VLLSATMP DVLEVT+KFMR P++ILVKKEELTLEGI+QFY+NV E
Sbjct: 199 YEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVERE 258
Query: 734 DYKFETLTDLYETLTITQAVIFCNTRRK 817
++K +TL DLYETLTITQAVIF NTRRK
Sbjct: 259 EWKLDTLCDLYETLTITQAVIFLNTRRK 286
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 402
Score = 360 bits (923), Expect = 4e-99
Identities = 178/263 (67%), Positives = 216/263 (82%)
Frame = +2
Query: 29 GEIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQAQSGT 208
G IE NY++V ESFDDM LKE+LLRGIY +GFEKPSAIQ+RA++P G DVIAQAQSGT
Sbjct: 18 GLIEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGT 77
Query: 209 GKTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRV 388
GKTATFSV+ILQRID VQALV+APTRELA+QI KV+ ALG+Y+ CIGGT V
Sbjct: 78 GKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSV 137
Query: 389 QEDVGNLENGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQ 568
++D LE G+HV+VGTPGRV DMI R L T+ IKMFVLDEADEMLSRGFK+QI+ V +
Sbjct: 138 RDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFR 197
Query: 569 FIEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFE 748
+ D Q+VLLSATMP +VL+VT +FMR+P++ILVKK+ELTLEGIRQFY+NV ++++KF+
Sbjct: 198 SMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFD 257
Query: 749 TLTDLYETLTITQAVIFCNTRRK 817
L DLY + +TQAVIFCNTRRK
Sbjct: 258 CLCDLYNVVNVTQAVIFCNTRRK 280
>sp|P10081|IF4A_YEAST Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) (Stimulator factor
I 37 kDa component) (p37)
Length = 395
Score = 350 bits (899), Expect = 2e-96
Identities = 174/262 (66%), Positives = 213/262 (81%)
Frame = +2
Query: 32 EIETNYEKVTESFDDMNLKEDLLRGIYAYGFEKPSAIQQRAVLPAIEGHDVIAQAQSGTG 211
+I+TNY+KV FDDM L E+LLRG++ YGFE+PSAIQQRA++P IEGHDV+AQAQSGTG
Sbjct: 12 QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTG 71
Query: 212 KTATFSVAILQRIDVTKNEVQALVLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRVQ 391
KT TFS+A LQRID + QAL+LAPTRELA QI KV++AL +M K +ACIGGT
Sbjct: 72 KTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 131
Query: 392 EDVGNLENGVHVIVGTPGRVNDMIERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQF 571
ED L + ++VGTPGRV D I+R +T+ IKMF+LDEADEMLS GFKEQI+ +
Sbjct: 132 EDAEGLRDA-QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 190
Query: 572 IEHDTQIVLLSATMPPDVLEVTRKFMRSPVKILVKKEELTLEGIRQFYVNVSEEDYKFET 751
+ TQ+VLLSATMP DVLEVT KFMR+PV+ILVKK+ELTLEGI+QFYVNV EE+YK+E
Sbjct: 191 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYEC 250
Query: 752 LTDLYETLTITQAVIFCNTRRK 817
LTDLY+++++TQAVIFCNTRRK
Sbjct: 251 LTDLYDSISVTQAVIFCNTRRK 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,974,233
Number of Sequences: 369166
Number of extensions: 1934821
Number of successful extensions: 5615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5273
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)