Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J03
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48920|NU5M_CHOCR NADH-ubiquinone oxidoreductase chain 5... 29 3.4
sp|O13947|TRMU_SCHPO Probable tRNA (5-methylaminomethyl-2-t... 28 7.5
>sp|P48920|NU5M_CHOCR NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 666
Score = 29.3 bits (64), Expect = 3.4
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = -2
Query: 179 FWGQNFIQIR*SNLT---FINVYXXXXXXXXFIYSCCKCNYNTYLLYFTIF 36
FW Q I+++ +T F ++ +YS +N LL+FT+F
Sbjct: 613 FWSQILIKLQTGQITHYLFFMIFTFCSFSIILVYSYINLTFNLLLLFFTLF 663
>sp|O13947|TRMU_SCHPO Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 415
Score = 28.1 bits (61), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 159 NKILPPKTTLYENGITDNCSIQMTASVKGG 248
N + P LYENG+T N + VK G
Sbjct: 107 NLVFEPSLDLYENGLTPNPDVSCNRQVKFG 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,682,845
Number of Sequences: 369166
Number of extensions: 324348
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)