Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J01
(533 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7V2A3|CLPB_PROMP Chaperone clpB 29 6.3
sp|O94200|K6PF2_CANAL 6-phosphofructokinase beta subunit (P... 29 8.2
>sp|Q7V2A3|CLPB_PROMP Chaperone clpB
Length = 860
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 19 NTKRRRYFLRLLN-MPSSASIDESSYQSNATIDPF 120
NTK+ FL LLN M S ++I+++ SN T+D F
Sbjct: 128 NTKKIPEFLELLNKMKSESTINDNFESSNETLDKF 162
>sp|O94200|K6PF2_CANAL 6-phosphofructokinase beta subunit (Phosphofructokinase 2)
(Phosphohexokinase) (6PF-1-K beta subunit) (CaPFK2)
Length = 946
Score = 28.9 bits (63), Expect = 8.2
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Frame = +1
Query: 28 RRRYFLRLLNMPSSASIDESSYQSNA-------TIDPFLYTNSSVRGRRKPCRRFCVGPV 186
RR + LN+ S+D +S T+ F YT P +CVGP+
Sbjct: 73 RRTEIIAKLNVTDWRSLDTTSVLKVQNLVALIETLTTFNYTLQITPNELYPNEVYCVGPI 132
Query: 187 DHQTIVINSTQCCINAAKPNNLVPTPSRSISQPPLFRDFLT 309
+ +I T C +P LVP +S +P L + ++
Sbjct: 133 GY---IIGFTAC----DEPLTLVPPLQKSHPKPGLVSNLMS 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,377,227
Number of Sequences: 369166
Number of extensions: 991370
Number of successful extensions: 2242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2242
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)