Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_I15
(213 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41951|PQN25_CAEEL Glutamine/asparagine-rich protein pqn-25 29 3.8
sp|P49125|TXALA_LATMA Alpha-latrotoxin-associated LMWP prec... 28 5.0
sp|O55186|CD59A_MOUSE CD59A glycoprotein precursor (Membran... 28 8.5
sp|P50537|MAE1_SCHPO Malic acid transport protein (Malate p... 28 8.5
>sp|P41951|PQN25_CAEEL Glutamine/asparagine-rich protein pqn-25
Length = 672
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 62 SCHDGCNSSYASCNNICYLAKPVDGTCLY--KCAN 160
S CNS+ S N +CY V G+C + +C N
Sbjct: 332 SSSSSCNSNQVSINGMCYNTVQVGGSCSFSQQCLN 366
Score = 27.7 bits (60), Expect = 8.5
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Frame = +2
Query: 44 SNSEAGSCHDG----CNSSYASCNNICYLAKPVDGTCLY--------KCANYFNSC 175
S++ G C G CNS+ NN CY P+ C +C N F C
Sbjct: 548 SSNVNGYCQGGSNGQCNSNQVYYNNQCYNTVPIGSQCQITQQCLGNSQCMNSFCQC 603
>sp|P49125|TXALA_LATMA Alpha-latrotoxin-associated LMWP precursor
Length = 88
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = +2
Query: 5 FLIVLLLINSIFVSNSEAGSCHDGCNSSYASCNNICY------LAKPVDGTCLYKC--AN 160
F++ L LI S+F + C D + + NN C + + C KC N
Sbjct: 6 FVVFLCLIISVFAISPADIGCTDISQADFDEKNNNCIKCGEDGFGEEMVNRCRDKCFTDN 65
Query: 161 YFNSCIILCN 190
++ SC+ L N
Sbjct: 66 FYQSCVDLLN 75
>sp|O55186|CD59A_MOUSE CD59A glycoprotein precursor (Membrane attack complex inhibition
factor) (MACIF) (MAC-inhibitory protein) (MAC-IP)
(Protectin)
Length = 123
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 8 LIVLLLINSIFVSNSEAGSCHDGCNSSYASCNNICYLAKPVDGTCLYKCA 157
LI+LLL+ ++F S + + +C+ +SC N+ P +CLY A
Sbjct: 7 LILLLLLLAVFCSTAVSLTCYHCFQPVVSSC-NMNSTCSPDQDSCLYAVA 55
>sp|P50537|MAE1_SCHPO Malic acid transport protein (Malate permease)
Length = 438
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 117 WLNQWMEHVYINVQIISILVSFFVILNKQIY 209
W+ + + ++Y+ V I +++FF I N +Y
Sbjct: 136 WVIRILYYIYVAVSFIYCVMAFFTIFNNHVY 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,151,310
Number of Sequences: 369166
Number of extensions: 261134
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)