Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_I07
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 362 e-100
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 362 e-100
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 362 e-100
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 362 e-100
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 362 e-100
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 362 e-100
sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin) 362 e-100
sp|P02554|TBB_PIG Tubulin beta chain 361 e-100
sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin) 360 2e-99
sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15) 360 2e-99
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P41386|TBB_HALDI Tubulin beta chain (Beta tubulin)
Length = 341
Score = 362 bits (929), Expect = e-100
Identities = 177/198 (89%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKEAESCDCLQGFQ
Sbjct: 12 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGS 71
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 72 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 131
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 132 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 191
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 192 FMPGFAPLTSRGSQQYRA 209
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 361 bits (926), Expect = e-100
Identities = 176/198 (88%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
Length = 443
Score = 360 bits (923), Expect = 2e-99
Identities = 175/198 (88%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
Length = 445
Score = 360 bits (923), Expect = 2e-99
Identities = 175/198 (88%), Positives = 179/198 (90%)
Frame = +2
Query: 2 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIVRKEAESCDCLQGFQXXXXXXXXXXX 181
RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+VRKE+ESCDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGS 145
Query: 182 XXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNE 361
KIREEYPDRIMNTFSV+PSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNE
Sbjct: 146 GMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 205
Query: 362 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 541
ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF
Sbjct: 206 ALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265
Query: 542 FMPGFAPLTSRGSQQYRA 595
FMPGFAPLTSRGSQQYRA
Sbjct: 266 FMPGFAPLTSRGSQQYRA 283
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,460,035
Number of Sequences: 369166
Number of extensions: 1321061
Number of successful extensions: 4101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3723
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)