Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_H15
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55726|Y4YR_RHISN Probable translocation protein y4yR 31 1.9
sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromos... 30 3.2
sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase (Farnesyl-diph... 29 7.1
sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 precursor ... 29 7.1
sp|Q25410|MIPR_LYMST Putative molluscan insulin-related pep... 28 9.3
sp|P22225|PFR1_TRYBB 69 kDa paraflagellar rod protein (69 k... 28 9.3
sp|Q8VHE6|DYH5_MOUSE Ciliary dynein heavy chain 5 (Axonemal... 28 9.3
sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor ... 28 9.3
sp|P08569|MSP1_PLAFM Merozoite surface protein 1 precursor ... 28 9.3
sp|P59918|Y435_PROMA Hypothetical UPF0284 protein Pro0435 28 9.3
>sp|P55726|Y4YR_RHISN Probable translocation protein y4yR
Length = 697
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -2
Query: 235 VEEKHSGHLLAIFLFYHNLPSYTLVMSMHQTVHVHLPQINGLSR*HGINGR 83
VE+ H L A + +H+ PS L M +H T+ H P++ G+ + GR
Sbjct: 449 VEQSHEPALKAAGIRHHS-PSELLAMRVHATLTCHAPRLVGIQETRQLLGR 498
>sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromosome II
Length = 1052
Score = 30.0 bits (66), Expect = 3.2
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 292 DFCVTETIQEIKQRIRTK---FHNFENLQLFSTSAFLEDSKQLLCYPMRNDCEIFLLDME 462
D TE EI Q I T+ H +N+ S S L + ++ MRNDCE FL E
Sbjct: 972 DNITTENSSEIVQVIHTEDDSLHFDDNVSTDSVS--LGNKSRISMDSMRNDCEAFLPKKE 1029
Query: 463 K 465
K
Sbjct: 1030 K 1030
>sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase (Farnesyl-diphosphate synthase) (FPP
synthase)
Length = 294
Score = 28.9 bits (63), Expect = 7.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 268 FSQDIGQMDFCVTETIQEIKQRIRTKFHNFENLQLFSTSAFLEDSKQLLCYPMRNDCE-- 441
FS IG C+ + + K+R + E + L+ T+ + S +L + N +
Sbjct: 145 FSNAIGYSGMCIGQMLDLEKERKKINISELEKINLYKTAFLIRCSIRLAYFASNNFSKEV 204
Query: 442 IFLLDMEKKRSVTI 483
+F+LD K SV+I
Sbjct: 205 LFILD---KFSVSI 215
>sp|P19598|MSP1_PLAF3 Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1682
Score = 28.9 bits (63), Expect = 7.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 175 LEDYDKIKIWQGDALNVSLQLRNPLCEANENFSQDIGQMDFCVTETIQEIKQRIRTKFHN 354
LEDY+K K + L +++ N NF++D+ F T KQR KF +
Sbjct: 472 LEDYEKSKKDYEELLEKFYEMK-----FNNNFNKDVVDKIFSARYTYNVEKQRYNNKFSS 526
Query: 355 FEN-----LQLFSTSAFLED 399
N +L ++LED
Sbjct: 527 SNNSVYNVQKLKKALSYLED 546
>sp|Q25410|MIPR_LYMST Putative molluscan insulin-related peptide(s) receptor precursor
[Contains: Putative molluscan insulin-related peptide(s)
receptor alpha chain; Putative molluscan insulin-related
peptide(s) receptor beta chain]
Length = 1607
Score = 28.5 bits (62), Expect = 9.3
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Frame = +1
Query: 124 GEDGHELSDASTLQECN-LEDYDKIKIWQGDALNVSLQLRNPLCEANENFSQDIGQMDFC 300
G + + + DA L+EC+ + KI+I G NV+ +L L E
Sbjct: 360 GLEINNIQDAHKLKECSKISGPLKIQIMSGS--NVAQELEKSLGNIRE------------ 405
Query: 301 VTETIQEIKQRIRTKFHNFENLQLFSTSAFLEDSKQLLCYPMRNDCEIFLLDMEKKRSVT 480
VTETI + H F+NLQ+ + ++++ +FL+D + +
Sbjct: 406 VTETIHIKRSYALVTLHFFKNLQIIGSKVPSSETQE------GQSFSLFLMDNTNLQELF 459
Query: 481 ISEKIK 498
E++K
Sbjct: 460 PEEQMK 465
>sp|P22225|PFR1_TRYBB 69 kDa paraflagellar rod protein (69 kDa PFR protein) (PFR-A/PFR-B)
Length = 600
Score = 28.5 bits (62), Expect = 9.3
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 220 NVSLQLRNPLCEANENFSQDIGQMDFCVTETIQEIKQRIRTKFHNFE-NLQLFSTSAFLE 396
++ LQ+ EA + +GQ+ + + ++EI + IRT E ++ F +A L
Sbjct: 434 DLRLQVHQEYLEAFRRLYKTLGQLVYKKEKRLEEIDRNIRTTHIQLEFAIETFDPNAKLH 493
Query: 397 DSKQLLCYPMRNDCE 441
K+ Y +R E
Sbjct: 494 SDKKKDLYKLRAQVE 508
>sp|Q8VHE6|DYH5_MOUSE Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
(Mdnah5)
Length = 4621
Score = 28.5 bits (62), Expect = 9.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 140 SCPSSPNKWIVPLTW 96
+CP P+KWI+ +TW
Sbjct: 3926 ACPPKPSKWILDMTW 3940
>sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1726
Score = 28.5 bits (62), Expect = 9.3
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 175 LEDYDKIKIWQGDALNVSLQLRNPLCEANENFSQDIGQMDFCVTETIQEIKQRIRTKFHN 354
LEDY+K K + L +++ N NF +D+ F T KQR KF +
Sbjct: 511 LEDYEKSKKDYEELLEKFYEMK-----FNNNFDKDVVDKIFSARYTYNVEKQRYNNKFSS 565
Query: 355 FEN-----LQLFSTSAFLED 399
N +L ++LED
Sbjct: 566 SNNSVYNVQKLKKALSYLED 585
>sp|P08569|MSP1_PLAFM Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1701
Score = 28.5 bits (62), Expect = 9.3
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 175 LEDYDKIKIWQGDALNVSLQLRNPLCEANENFSQDIGQMDFCVTETIQEIKQRIRTKFHN 354
LEDY+K K + L +++ N NF +D+ F T KQR KF +
Sbjct: 480 LEDYEKSKKDYEELLEKFYEMK-----FNNNFDKDVVDKIFSARYTYNVEKQRYNNKFSS 534
Query: 355 FEN-----LQLFSTSAFLED 399
N +L ++LED
Sbjct: 535 SNNSVYNVQKLKKALSYLED 554
>sp|P59918|Y435_PROMA Hypothetical UPF0284 protein Pro0435
Length = 397
Score = 28.5 bits (62), Expect = 9.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 221 FRASPCHIFILS*SSKLHSCNVDASDSSCPSSPNKWI 111
F ++ +IF L S + CNV S SS PS N+WI
Sbjct: 4 FESTQSNIFSLRSSDR---CNVFGSSSSSPSLLNRWI 37
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,929,693
Number of Sequences: 369166
Number of extensions: 1166598
Number of successful extensions: 2946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2946
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)