Planarian EST Database

Dr_sW_024_H12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_024_H12
         (786 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K9Z2|SYI_BUCAP  Isoleucyl-tRNA synthetase (Isoleucine--...    31   3.4  

>sp|Q8K9Z2|SYI_BUCAP Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 938

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -2

Query: 446  VNNVKRKIKYINVTPFAIRTFQNLIKK*KIYFKLNGVRIQIKTNSSIRSTREQRVCNMTL 267
            +NN       + VTP   +T   L ++ K  F  + V+I++   + I ST+ +++ N  +
Sbjct: 834  INNSLEACLILYVTPEVKKTLNILGEELKFIFLTSKVKIELYNTAPINSTKSKKISNFKI 893

Query: 266  HIK 258
             +K
Sbjct: 894  FLK 896

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,819,913
Number of Sequences: 369166
Number of extensions: 1152907
Number of successful extensions: 2268
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2268
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)