Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_H07
(880 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 303 5e-82
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 303 5e-82
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 300 4e-81
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 298 1e-80
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 296 7e-80
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 289 8e-78
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 287 3e-77
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 286 7e-77
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 285 2e-76
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 284 3e-76
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 303 bits (775), Expect = 5e-82
Identities = 154/275 (56%), Positives = 183/275 (66%), Gaps = 5/275 (1%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVD
Sbjct: 62 HNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS
Sbjct: 120 WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 539
LMD AF+Y++D G++SE YPY AT+ +CK NP V TGF DI Q E L A
Sbjct: 180 GGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EKALMKA 238
Query: 540 VATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQI----GKKYWIV 707
VATVGP+SVAIDAGH SF YK GIY E CS+ +DHGVL VGYG + KYW+V
Sbjct: 239 VATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLV 298
Query: 708 KNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
KNSW WG GY+KM+KD++N CGIA+ ASYP V
Sbjct: 299 KNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 303 bits (775), Expect = 5e-82
Identities = 150/275 (54%), Positives = 183/275 (66%), Gaps = 5/275 (1%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP SVD
Sbjct: 62 HNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 120 WRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 539
M AF+Y+K+ G++SE YPY A D CK P V TGFT + E L A
Sbjct: 180 GGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKA 239
Query: 540 VATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYG----TQIGKKYWIV 707
VATVGP+SVA+DAGH+SFQ YKSGIY E CS+ LDHGVL VGYG KYW+V
Sbjct: 240 VATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLV 299
Query: 708 KNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
KNSW WG +GY+K++KDK N CGIAT ASYP V
Sbjct: 300 KNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 300 bits (768), Expect = 4e-81
Identities = 154/275 (56%), Positives = 180/275 (65%), Gaps = 5/275 (1%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVD
Sbjct: 62 HNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 120 WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLAN 536
LMDNAFRY+KD G++SE YPY D TC P TGF D+ Q E L
Sbjct: 180 GGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDL-PQREKALMK 238
Query: 537 AVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGY---GTQIGKKYWIV 707
AVAT+GP+SVAIDAGH SFQ YKSGIY + CS+ LDHGVL VGY GT K+WIV
Sbjct: 239 AVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIV 298
Query: 708 KNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
KNSW WG +GY+KM+KD+ N CGIAT ASYP V
Sbjct: 299 KNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 333
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 298 bits (764), Expect = 1e-80
Identities = 156/276 (56%), Positives = 180/276 (65%), Gaps = 6/276 (2%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVD
Sbjct: 62 HNQEYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
W +KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 120 WTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLAN 536
LMDNAF+YIKD G++SE YPY ATD +C P TGF DI Q E L
Sbjct: 180 GGLMDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDI-PQREKALMK 238
Query: 537 AVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ----IGKKYWI 704
AVATVGP+SVAIDAGH SFQ YKSGIY + CS LDHGVL VGYG + K+WI
Sbjct: 239 AVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVLVVGYGFEGTDSNNNKFWI 298
Query: 705 VKNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
VKNSW WG +GY+KM+KD+ N CGIAT ASYP V
Sbjct: 299 VKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 296 bits (757), Expect = 7e-80
Identities = 151/279 (54%), Positives = 185/279 (66%), Gaps = 9/279 (3%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLEGSTYMAPENIG 161
HN + GK +Y LGLN++ADM + EFK G +M+ + L G+TY+ P ++
Sbjct: 62 HNQLFAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVT 121
Query: 162 VLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXX 341
V P SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S SEQ LVDCS
Sbjct: 122 V-PKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTK 180
Query: 342 XXXXXXXXXLMDNAFRYIKDQG-IESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQN 518
LMDNAFRYIKD G I++E YPY D +C N + I TGF DI +
Sbjct: 181 YGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGD 240
Query: 519 ETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT-QIGKK 695
E + AVAT+GPVSVAIDA H SFQLY G+YNE C LDHGVL VGYGT + G
Sbjct: 241 EEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDESGMD 300
Query: 696 YWIVKNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
YW+VKNSW TWGE GYIKM++++ NQCGIAT +SYP V
Sbjct: 301 YWLVKNSWGTTWGEQGYIKMARNQNNQCGIATASSYPTV 339
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 289 bits (739), Expect = 8e-78
Identities = 150/276 (54%), Positives = 180/276 (65%), Gaps = 6/276 (2%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVD
Sbjct: 62 HNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 120 WREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLAN 536
LMDNAF+Y+KD G+++E YPY + +C P TGF DI Q E L
Sbjct: 180 GGLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDI-PQREKALMK 238
Query: 537 AVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQ----IGKKYWI 704
AVATVGP+SVAIDAGH+SFQ YKSGIY + CS+ LDHGVL VGYG + K+WI
Sbjct: 239 AVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWI 298
Query: 705 VKNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
VKNSW WG +GY+KM+KD+ N CGI+T ASYP V
Sbjct: 299 VKNSWGPEWGWNGYVKMAKDQNNHCGISTAASYPTV 334
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 287 bits (734), Expect = 3e-77
Identities = 144/280 (51%), Positives = 185/280 (66%), Gaps = 10/280 (3%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKT--------KPTLEGSTYMAPENI 158
HN + GK ++ L +N++AD+ + EF+ G T + +G T+++P ++
Sbjct: 63 HNQRFAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHV 122
Query: 159 GVLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSX 338
LP SVDWR KG VT VK+Q CGSCW+FS+TG+LEGQ+FRK+ L+S SEQ LVDCS
Sbjct: 123 -TLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCST 181
Query: 339 XXXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQ 515
LMDNAFRYIKD GI++E YPY A D +C N + GFTDI
Sbjct: 182 KYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQG 241
Query: 516 NETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGT-QIGK 692
+E +A AVATVGPVSVAIDA H SFQ Y G+YNE C LDHGVL VG+GT + G+
Sbjct: 242 DEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGE 301
Query: 693 KYWIVKNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
YW+VKNSW TWG+ G+IKM ++K+NQCGIA+ +SYPLV
Sbjct: 302 DYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV 341
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 286 bits (731), Expect = 7e-77
Identities = 139/270 (51%), Positives = 185/270 (68%), Gaps = 1/270 (0%)
Frame = +3
Query: 6 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 185
N +Y+ G+ T++L +N+F DMT EEF A G + + + S + + G VDW
Sbjct: 55 NKKYENGEVTFNLAMNKFGDMTLEEFNAVMKGNIPRR-SAPVSVFYPKKETGPQATEVDW 113
Query: 186 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 365
R KG VTPVK+Q QCGSCW+FS TGSLEGQ+F K LIS +EQQLVDCS
Sbjct: 114 RTKGAVTPVKDQGQCGSCWAFSTTGSLEGQHFLKTGSLISLAEQQLVDCSRPYGPQGCNG 173
Query: 366 XLMDNAFRYIK-DQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 542
M++AF YIK + GI++E YPY A DG+C+ + + + C+G T+I S +ET L AV
Sbjct: 174 GWMNDAFDYIKANNGIDTEAAYPYEARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAV 233
Query: 543 ATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQIGKKYWIVKNSWD 722
+GP+SV IDA H+SFQ Y SG+Y E SCS + LDH VLAVGYG++ G+ +W+VKNSW
Sbjct: 234 RDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEGGQDFWLVKNSWA 293
Query: 723 VTWGESGYIKMSKDKKNQCGIATMASYPLV 812
+WG++GYIKMS+++ N CGIAT+ASYPLV
Sbjct: 294 TSWGDAGYIKMSRNRNNNCGIATVASYPLV 323
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 285 bits (728), Expect = 2e-76
Identities = 136/270 (50%), Positives = 177/270 (65%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HNL +DLG TY+LGLNQF DMT EEFKAKYL M + N +P +D
Sbjct: 54 HNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKID 113
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+ GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS
Sbjct: 114 WRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCS 173
Query: 363 XXLMDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 542
LM+NA++Y+K G+E+E YPYTA +G C+ N V K TG+ + S +E +L N V
Sbjct: 174 GGLMENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLV 233
Query: 543 ATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGYGTQIGKKYWIVKNSWD 722
P +VA+D + F +Y+SGIY ++CS +++H VLAVGYGTQ G YWIVKNSW
Sbjct: 234 GARRPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWG 292
Query: 723 VTWGESGYIKMSKDKKNQCGIATMASYPLV 812
WGE GYI+M++++ N CGIA++AS P+V
Sbjct: 293 TYWGERGYIRMARNRGNMCGIASLASLPMV 322
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 284 bits (726), Expect = 3e-76
Identities = 150/275 (54%), Positives = 179/275 (65%), Gaps = 5/275 (1%)
Frame = +3
Query: 3 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVD 182
HN EY GKH +++ +N F DMTNEEF+ G K +G + P + + P +VD
Sbjct: 62 HNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQEPLMLQI-PKTVD 119
Query: 183 WRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXX 362
WR+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 120 WREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCN 179
Query: 363 XXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANA 539
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L A
Sbjct: 180 GGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDI-PQQEKALMKA 238
Query: 540 VATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLAVGY---GTQIGK-KYWIV 707
VATVGP+SVA+DA H S Q Y SGIY E +CS+ LDHGVL VGY GT K KYW+V
Sbjct: 239 VATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLV 298
Query: 708 KNSWDVTWGESGYIKMSKDKKNQCGIATMASYPLV 812
KNSW WG GYIK++KD+ N CG+AT ASYP+V
Sbjct: 299 KNSWGKEWGMDGYIKIAKDRNNHCGLATAASYPIV 333
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,176,603
Number of Sequences: 369166
Number of extensions: 2042002
Number of successful extensions: 6056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5469
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)