Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_H06
(719 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7RAH3|CDPK1_PLAYO Calcium-dependent protein kinase 1 53 9e-07
sp|Q8ICR0|CDPK2_PLAF7 Calcium-dependent protein kinase 2 (P... 51 3e-06
sp|O15865|CDPK2_PLAFK Calcium-dependent protein kinase 2 (P... 51 3e-06
sp|P62343|CDPK1_PLAFK Calcium-dependent protein kinase 1 (P... 51 4e-06
sp|Q11179|YPC2_CAEEL Putative serine/threonine-protein kina... 46 1e-04
sp|P29618|CDC21_ORYSA Cell division control protein 2 homol... 45 1e-04
sp|Q9R0A5|NEK3_MOUSE Serine/threonine-protein kinase Nek3 (... 45 2e-04
sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase, iso... 44 3e-04
sp|P24100|CDC2A_ARATH Cell division control protein 2 homol... 44 4e-04
sp|P23111|CDC2_MAIZE Cell division control protein 2 homolo... 44 6e-04
>sp|Q7RAH3|CDPK1_PLAYO Calcium-dependent protein kinase 1
Length = 535
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Frame = +3
Query: 432 KKIDQGQYGKIFLCYDEISRSTVAMKKCKL---------EANGKLENF-TGIINEIQVVS 581
+K+ G YG++ LC ++ S A+K K + N +E F I NEI ++
Sbjct: 61 RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYNDDNKNIEKFHEEIYNEISLLK 120
Query: 582 LLMDHPNIIKIFDFYRDEKYF 644
L DHPNIIK+FD + D+KYF
Sbjct: 121 SL-DHPNIIKLFDVFEDKKYF 140
>sp|Q8ICR0|CDPK2_PLAF7 Calcium-dependent protein kinase 2 (PfCDPK2)
Length = 509
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/97 (27%), Positives = 55/97 (56%)
Frame = +3
Query: 366 LLKEHLELCYVLIMSMENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLEN 545
L +++L LC+ + + + +K+ QG YG ++ D+++ A+K+ E +L+N
Sbjct: 55 LERKNLILCHSGKLE-DKYIIDEKLGQGTYGCVYKGIDKVTNQLYAIKE---EKKDRLKN 110
Query: 546 FTGIINEIQVVSLLMDHPNIIKIFDFYRDEKYFCVTM 656
EI+++ L DHPNI+K+++ Y ++ Y + M
Sbjct: 111 INRFFQEIEIMKKL-DHPNIVKLYETYENDNYIYLIM 146
>sp|O15865|CDPK2_PLAFK Calcium-dependent protein kinase 2 (PfCDPK2)
Length = 513
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/97 (27%), Positives = 55/97 (56%)
Frame = +3
Query: 366 LLKEHLELCYVLIMSMENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLEN 545
L +++L LC+ + + + +K+ QG YG ++ D+++ A+K+ E +L+N
Sbjct: 55 LERKNLILCHSGKLE-DKYIIDEKLGQGTYGCVYKGIDKVTNQLYAIKE---EKKDRLKN 110
Query: 546 FTGIINEIQVVSLLMDHPNIIKIFDFYRDEKYFCVTM 656
EI+++ L DHPNI+K+++ Y ++ Y + M
Sbjct: 111 INRFFQEIEIMKKL-DHPNIVKLYETYENDNYIYLIM 146
>sp|P62343|CDPK1_PLAFK Calcium-dependent protein kinase 1 (PfCPK) (PfCDPK1)
sp|P62344|CDPK1_PLAF7 Calcium-dependent protein kinase 1
Length = 524
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Frame = +3
Query: 432 KKIDQGQYGKIFLCYDEISRSTVAMK--------KCKLEANGKLENFTGIINEI-QVVSL 584
+K+ G YG++ LC ++ A+K K K K+E I EI +SL
Sbjct: 60 RKLGSGAYGEVLLCREKHGHGEKAIKVIKKSQFDKMKYSITNKIECDDKIHEEIYNEISL 119
Query: 585 L--MDHPNIIKIFDFYRDEKYF 644
L +DHPNIIK+FD + D+KYF
Sbjct: 120 LKSLDHPNIIKLFDVFEDKKYF 141
>sp|Q11179|YPC2_CAEEL Putative serine/threonine-protein kinase C05D10.2 in chromosome III
Length = 470
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 414 ENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLENFTGIINEIQVVSLLMD 593
E +QK++ +G YG ++ YD+ SR TVA+KK +A + E+ +
Sbjct: 11 EKFDLQKRLGKGAYGIVWKAYDKRSRETVALKKI-FDAFRNPTDSQRTFREVMFLQEFGK 69
Query: 594 HPNIIKIFDFYR 629
HPN+IK+++ +R
Sbjct: 70 HPNVIKLYNIFR 81
>sp|P29618|CDC21_ORYSA Cell division control protein 2 homolog 1
Length = 294
Score = 45.4 bits (106), Expect = 1e-04
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 411 MENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLENFTGIINEIQVVSLL- 587
ME ++KI +G YG ++ D+++ T+A+KK +LE + T I+ +SLL
Sbjct: 1 MEQYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTA----IREISLLK 56
Query: 588 -MDHPNIIKIFDFYRDEK 638
M H NI+++ D EK
Sbjct: 57 EMHHGNIVRLHDVIHSEK 74
>sp|Q9R0A5|NEK3_MOUSE Serine/threonine-protein kinase Nek3 (NimA-related protein kinase
3)
Length = 511
Score = 45.1 bits (105), Expect = 2e-04
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +3
Query: 411 MENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLENFTGIINEIQVVSLLM 590
M+N TV + I QG +G+ L E S T AMK+ +L L++ T + V+ M
Sbjct: 1 MDNYTVLRVIGQGSFGRALLVLQESSNQTFAMKEIRL-----LKSDTQTSRKEAVLLAKM 55
Query: 591 DHPNIIKIFDFYRDEKYFCVTM 656
HPNI+ + + E Y + M
Sbjct: 56 KHPNIVAFKESFEAEGYLYIVM 77
>sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase, isoform AK1 (CDPK)
Length = 610
Score = 44.3 bits (103), Expect = 3e-04
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 414 ENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKL---ENFTGIINEIQVVSL 584
E ++ +K+ QGQ+G FLC ++ + A CK A KL E+ + EIQ++
Sbjct: 148 EFYSLGRKLGQGQFGTTFLCVEKTTGKEFA---CKSIAKRKLLTDEDVEDVRREIQIMHH 204
Query: 585 LMDHPNIIKIFDFYRD 632
L HPN+I I Y D
Sbjct: 205 LAGHPNVISIKGAYED 220
>sp|P24100|CDC2A_ARATH Cell division control protein 2 homolog A
Length = 294
Score = 43.9 bits (102), Expect = 4e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 411 MENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLENFTGIINEIQVVSLL- 587
M+ +KI +G YG ++ D+++ T+A+KK +LE + T I+ +SLL
Sbjct: 1 MDQYEKVEKIGEGTYGVVYKARDKVTNETIALKKIRLEQEDEGVPSTA----IREISLLK 56
Query: 588 -MDHPNIIKIFDFYRDEK 638
M H NI+K+ D EK
Sbjct: 57 EMQHSNIVKLQDVVHSEK 74
>sp|P23111|CDC2_MAIZE Cell division control protein 2 homolog (p34cdc2)
Length = 294
Score = 43.5 bits (101), Expect = 6e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 411 MENVTVQKKIDQGQYGKIFLCYDEISRSTVAMKKCKLEANGKLENFTGIINEIQVVSLL- 587
ME +KI +G YG ++ D+ + T+A+KK +LE + T I+ +SLL
Sbjct: 1 MEQYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTA----IREISLLK 56
Query: 588 -MDHPNIIKIFDFYRDEK 638
M+H NI+++ D EK
Sbjct: 57 EMNHGNIVRLHDVVHSEK 74
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,718,527
Number of Sequences: 369166
Number of extensions: 1787198
Number of successful extensions: 4962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4925
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)