Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G16
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 327 1e-89
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 326 2e-89
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 323 2e-88
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 322 4e-88
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 322 4e-88
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 249 4e-66
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 247 1e-65
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 245 7e-65
sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 206 3e-53
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 173 3e-43
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 327 bits (839), Expect = 1e-89
Identities = 147/201 (73%), Positives = 177/201 (88%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
LTAQWLPDV PEGKD+ +HRL+LGTHTSDEQNHL+IA+ +P D +FD + Y+ +KGE
Sbjct: 45 LTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGE 104
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
FGGFGSV+GKIEI IKINH+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+
Sbjct: 105 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPS 164
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
G C PDLRL+GHQKEGYGLSWNP S +LLSASDD+TIC+WDI+ P++ +++DA +IFT
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFT 224
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GH++VVEDVS HLLHE +FGS
Sbjct: 225 GHTAVVEDVSWHLLHESLFGS 245
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVS 571
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D S
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFS 381
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQ--P 376
N K++++ +H E+ + ++ P N TI+A+ + V+D +K + P P
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 377 DLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
+L GH + SWNP + S S+DN + +W +
Sbjct: 365 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
N +P + H E LS+NP L + S D T+ +WD+
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 326 bits (836), Expect = 2e-89
Identities = 147/201 (73%), Positives = 176/201 (87%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
LTAQWLPDV PEGKD+ +HRL+LGTHTSDEQNHL+IA+ +P D +FD + Y+ +KGE
Sbjct: 45 LTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGE 104
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
FGGFGSV+GKIEI IKINH+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+
Sbjct: 105 FGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPS 164
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
G C PDLRL+GHQKEGYGLSWNP S +LLSASDD+TIC+WDI+ P+ +++DA +IFT
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFT 224
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GH++VVEDVS HLLHE +FGS
Sbjct: 225 GHTAVVEDVSWHLLHESLFGS 245
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVS 571
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D S
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFS 381
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQ--P 376
N K++++ +H E+ + ++ P N TI+A+ + V+D +K + P P
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 377 DLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
+L GH + SWNP + S S+DN + +W +
Sbjct: 365 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
N +P + H E LS+NP L + S D T+ +WD+
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 323 bits (829), Expect = 2e-88
Identities = 147/201 (73%), Positives = 177/201 (88%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
LTAQWLPDV +GKDY +HRLILGTHTSDEQNHLLIA+ +P++ +FD + Y+ +KGE
Sbjct: 49 LTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGE 108
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
FGGFGSV GKIEI IKINH+GEVNRARY+PQN +IATK+PSSDVLVFDYTKHP+KP+P+
Sbjct: 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS 168
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
G CQPDLRL+GHQKEGYGLSWNP + YLLSASDD+TIC+WDIN +P++ R+IDA +IFT
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT 228
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GH++VVEDV+ HLLHE +FGS
Sbjct: 229 GHTAVVEDVAWHLLHESLFGS 249
Score = 42.7 bits (99), Expect = 7e-04
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 326
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVS 571
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D S
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS 385
Score = 39.3 bits (90), Expect = 0.008
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK-------HPAKPDPN 361
N K++++ +H E+ + ++ P N TI+A+ + V+D +K A+ P
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP- 367
Query: 362 GLCQPDLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
P+L GH + SWNP + S S+DN + +W +
Sbjct: 368 ----PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
N +P + H E LS+NP L + S D T+ +WD+
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 322 bits (826), Expect = 4e-88
Identities = 147/201 (73%), Positives = 171/201 (85%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
LT QWLP+V PEGKDY LH L+LGTHTSDEQNHL++A HIP D +FD + + DKGE
Sbjct: 44 LTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGE 103
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
FGGFGSV GKIE IKINH+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+
Sbjct: 104 FGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPS 163
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
G C PDLRL+GHQKEGYGLSWN S +LLSASDD+T+C+WDIN P++ +I+DA +IFT
Sbjct: 164 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 223
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GHS+VVEDV+ HLLHE +FGS
Sbjct: 224 GHSAVVEDVAWHLLHESLFGS 244
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVS 571
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D S
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 380
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK----HPAKPDPNGLC 370
N K++++ +H E+ + + P N TI+A+ + V+D +K A+ +G
Sbjct: 304 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG-- 361
Query: 371 QPDLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
P+L GH + SWNP + S S+DN + +W +
Sbjct: 362 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 403
Score = 29.6 bits (65), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
N +P + H E LS+NP L + S D T+ +WD+
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 302
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 322 bits (826), Expect = 4e-88
Identities = 147/201 (73%), Positives = 171/201 (85%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
LT QWLP+V PEGKDY LH L+LGTHTSDEQNHL++A HIP D +FD + + DKGE
Sbjct: 44 LTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGE 103
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
FGGFGSV GKIE IKINH+GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+
Sbjct: 104 FGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPS 163
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
G C PDLRL+GHQKEGYGLSWN S +LLSASDD+T+C+WDIN P++ +I+DA +IFT
Sbjct: 164 GECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT 223
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GHS+VVEDV+ HLLHE +FGS
Sbjct: 224 GHSAVVEDVAWHLLHESLFGS 244
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVS 571
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D S
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 380
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK----HPAKPDPNGLC 370
N K++++ +H E+ + + P N TI+A+ + V+D +K A+ +G
Sbjct: 304 NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG-- 361
Query: 371 QPDLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
P+L GH + SWNP + S S+DN + +W +
Sbjct: 362 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 403
Score = 29.6 bits (65), Expect = 6.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
N +P + H E LS+NP L + S D T+ +WD+
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 302
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 249 bits (636), Expect = 4e-66
Identities = 117/201 (58%), Positives = 149/201 (74%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGE 181
L+ QWLPDV + D+ +HRLILGTHTSDEQNHLLI+ +PTD +FD ++Y+ ++ E
Sbjct: 10 LSVQWLPDVA-KDNSDHTIHRLILGTHTSDEQNHLLISKICMPTDDAQFDASRYDTERSE 68
Query: 182 FGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPN 361
+GGFG+VNGK+E +I+INH+GEVNRARY+PQ IIATKSP +DV +FDY KH A P N
Sbjct: 69 YGGFGAVNGKVEPDIRINHEGEVNRARYMPQKSNIIATKSPHADVYIFDYLKHSAVPRDN 128
Query: 362 GLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFT 541
P +RLKGH KEGYGLSWNP + +LSASDD T+C WDIN + + A +F
Sbjct: 129 TF-NPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFK 187
Query: 542 GHSSVVEDVS*HLLHEHIFGS 604
GH SVVEDV+ H+LH+ +FGS
Sbjct: 188 GHESVVEDVAWHVLHDGVFGS 208
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLK-----GHQ 400
H EVN + P + I+AT S V ++D +LR+K H+
Sbjct: 232 HSAEVNCLAFNPYSEFILATGSADKTVALWDLR--------------NLRMKLHSFESHR 277
Query: 401 KEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVV 559
E + + W+P L S+ D + +WD++ DQ DA L I GH++ +
Sbjct: 278 DEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKI 337
Query: 560 EDVS 571
D S
Sbjct: 338 SDFS 341
Score = 38.9 bits (89), Expect = 0.010
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Frame = +2
Query: 203 NGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK----HPAKPDPNGLC 370
N +++++ +H E+ + ++ P N TI+A+ + V+D +K A+ +G
Sbjct: 265 NLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDG-- 322
Query: 371 QPDLRL--KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
P+L GH + SWNP + S S+DN + +W +
Sbjct: 323 PPELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNILQVWQM 364
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 247 bits (631), Expect = 1e-65
Identities = 114/202 (56%), Positives = 152/202 (75%), Gaps = 1/202 (0%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSD-EQNHLLIATAHIPTDSNEFDINKYEPDKG 178
LT +WLPD P GKDY + ++ILGTHTS+ E N+L++A +P + E D Y+ D+
Sbjct: 45 LTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRS 104
Query: 179 EFGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDP 358
EFGGFG NGK++I +INHDGEVNRARY+PQNP IIATK+ S++V VFDY+KHP+KP
Sbjct: 105 EFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPL 164
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIF 538
+G C PDLRL+GH EGYGLSW+ + +LLS SDD+ IC+WDIN +P++ + ++A+ IF
Sbjct: 165 DGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICLWDINATPKN-KALEAMQIF 223
Query: 539 TGHSSVVEDVS*HLLHEHIFGS 604
H VVEDV+ HL HE++FGS
Sbjct: 224 KVHEGVVEDVAWHLRHEYLFGS 245
Score = 48.5 bits (114), Expect = 1e-05
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Frame = +2
Query: 230 INHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEG 409
+ H EVN + P N ++AT S V +FD K + L H++E
Sbjct: 270 VAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------ISTALHTLDCHKEEV 320
Query: 410 YGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDV 568
+ + WNPK L S + +WD++ +Q DA L I GH+S + D
Sbjct: 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF 380
Query: 569 S 571
S
Sbjct: 381 S 381
Score = 35.4 bits (80), Expect = 0.11
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQ--PDLRL--KGHQK 403
H EV + + P+N TI+A+ ++V+D ++ + P P+L GH
Sbjct: 316 HKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTS 375
Query: 404 EGYGLSWNPKRSAYLLSASDDNTICMWDI 490
+ SWNP + S ++DN + +W +
Sbjct: 376 KISDFSWNPCEDWVVASVAEDNILQIWQM 404
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 245 bits (625), Expect = 7e-65
Identities = 112/202 (55%), Positives = 150/202 (74%), Gaps = 1/202 (0%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHTSD-EQNHLLIATAHIPTDSNEFDINKYEPDKG 178
LT +WLPD P GKDY + ++ILGTHTS+ E N+L++A +P D E + +Y+ D+
Sbjct: 45 LTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRS 104
Query: 179 EFGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDP 358
EFGGFG GK++I +INHDGEVNRARY+PQNP IIATK+ +++V VFDY+KHP+KP
Sbjct: 105 EFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPL 164
Query: 359 NGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIF 538
+G C PDL+L+GH EGYGLSW+ + +LLS SDD IC+WDIN +P++ + +DA IF
Sbjct: 165 DGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKN-KSLDAQQIF 223
Query: 539 TGHSSVVEDVS*HLLHEHIFGS 604
H VVEDV+ HL HE++FGS
Sbjct: 224 KAHEGVVEDVAWHLRHEYLFGS 245
Score = 50.1 bits (118), Expect = 4e-06
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Frame = +2
Query: 230 INHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEG 409
+ H EVN + P N ++AT S V +FD K L H++E
Sbjct: 270 VAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------LSTALHTFDSHKEEV 320
Query: 410 YGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDV 568
+ + WNPK L S + +WD++ +Q + DA L I GH+S + D
Sbjct: 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDF 380
Query: 569 S 571
S
Sbjct: 381 S 381
Score = 33.1 bits (74), Expect = 0.56
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Frame = +2
Query: 233 NHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK-------HPAKPDPNGLCQPDLRL- 388
+H EV + + P+N TI+A+ ++V+D ++ A+ P P+L
Sbjct: 315 SHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGP-----PELLFI 369
Query: 389 -KGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
GH + SWNP + S ++DN + +W +
Sbjct: 370 HGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQM 404
>sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1
Length = 412
Score = 206 bits (525), Expect = 3e-53
Identities = 105/203 (51%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKDYGLHRLILGTHT-SDEQNHLLIATAHIPTDSNEFDINKYEPDKG 178
L+ QW+PDV E D +HR+I GTHT QNHL+I+ I TD+ EFD K++ ++
Sbjct: 38 LSVQWMPDVTKTENSDSSMHRMIHGTHTCGGVQNHLMISKFTITTDTPEFDDAKWDSERE 97
Query: 179 EFGGFGSVNG-KIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPD 355
EFGG+G + K + IKINH GEV+RARY+P NP IIA++ PS DV +FDYTKHP++P
Sbjct: 98 EFGGYGEGSAAKWDTEIKINHPGEVHRARYMPHNPFIIASRGPSDDVYIFDYTKHPSEPK 157
Query: 356 PNGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSI 535
+P LRLKGH+ EGYG+SW+ R +LL+A DD IC WDIN + I S
Sbjct: 158 DTKF-RPQLRLKGHEGEGYGMSWSNTREGHLLTAGDDGMICHWDINANQTISGQIVPQSK 216
Query: 536 FTGHSSVVEDVS*HLLHEHIFGS 604
F GHSS EDVS H LH +FGS
Sbjct: 217 FKGHSSNAEDVSFHALHNFVFGS 239
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +2
Query: 233 NHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLK------G 394
+H+ E+ + + P T++A+ V+V+D +K + + + G
Sbjct: 306 HHNDEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPEVIFIHAG 365
Query: 395 HQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTS 499
H + SWNP R + S+ + N + +W+++ S
Sbjct: 366 HTGKVADFSWNPNRPWTICSSDEFNALQVWEVSNS 400
Score = 30.0 bits (66), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 371 QPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDI 490
+P L GH E +++NP L + S D T+ +WD+
Sbjct: 255 KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDM 294
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 173 bits (438), Expect = 3e-43
Identities = 90/204 (44%), Positives = 126/204 (61%), Gaps = 3/204 (1%)
Frame = +2
Query: 2 LTAQWLPDVVCPEGKD--YGLHRLILGTHTSDE-QNHLLIATAHIPTDSNEFDINKYEPD 172
LT W+P P D +G+H+LILGTHTS Q+ L++A PT + E I D
Sbjct: 42 LTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQD 101
Query: 173 KGEFGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKP 352
K+EI +I DGEVNRAR +PQ PT++ K+ +V +FDY KH AK
Sbjct: 102 P--------FIPKVEIRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKS 153
Query: 353 DPNGLCQPDLRLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALS 532
+ C PDLRL GH KEGYGLSW+P + YLLS S D IC+WD++ +P+D ++++A+
Sbjct: 154 QTSE-CDPDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQD-KVLNAMF 211
Query: 533 IFTGHSSVVEDVS*HLLHEHIFGS 604
++ GH S + DVS H+ +E++FGS
Sbjct: 212 VYEGHESAIADVSWHMKNENLFGS 235
Score = 50.1 bits (118), Expect = 4e-06
Identities = 28/96 (29%), Positives = 45/96 (46%)
Frame = +2
Query: 236 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 415
H+ EVN + P N ++AT S S V +FD K L P + H+ E +
Sbjct: 259 HEREVNYLSFNPFNEWVLATASSDSTVALFDLRK---------LNAPLHVMSSHEGEVFQ 309
Query: 416 LSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIID 523
+ W+P L S+ +D + +WD+N +Q I+
Sbjct: 310 VEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIE 345
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Frame = +2
Query: 218 INIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKH---------PAKPDPNGLC 370
+++ +H+GEV + + P + T++A+ ++V+D + A+ P
Sbjct: 297 LHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGP---- 352
Query: 371 QPDLRLK--GHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTS 499
P+L GH+ + +WN + S ++DN++ +W + S
Sbjct: 353 -PELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAES 396
Score = 32.7 bits (73), Expect = 0.73
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +2
Query: 383 RLKGHQKEGYGLSWNPKRSAYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVE 562
++K H++E LS+NP L +AS D+T+ ++D+ +++ L + + H V
Sbjct: 255 QVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDL------RKLNAPLHVMSSHEGEVF 308
Query: 563 DVS*HLLHEHIFGS 604
V HE + S
Sbjct: 309 QVEWDPNHETVLAS 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,016,857
Number of Sequences: 369166
Number of extensions: 1563572
Number of successful extensions: 5044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4959
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)