Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G06
(849 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VZW5|FMAR_DROME FMRFamide receptor (Larval opioid rece... 44 6e-04
sp|Q899T2|Y086_CLOTE Hypothetical UPF0182 protein CTC00086 35 0.20
sp|P49523|CCSA_ODOSI CYTOCHROME C BIOGENESIS PROTEIN CCSA 33 1.00
sp|P56479|GALR1_MOUSE Galanin receptor type 1 (GAL1-R) (GALR1) 33 1.3
sp|P47211|GALR1_HUMAN Galanin receptor type 1 (GAL1-R) (GALR1) 33 1.3
sp|Q62805|GALR1_RAT Galanin receptor type 1 (GAL1-R) (GALR1) 33 1.3
sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog 32 2.2
sp|Q25158|OPSC2_HEMSA Compound eye opsin BCRH2 31 3.8
sp|P36034|COS9_YEAST COS9 protein 31 5.0
sp|Q33078|MATK_SAXCE Maturase K (Intron maturase) 30 8.4
>sp|Q9VZW5|FMAR_DROME FMRFamide receptor (Larval opioid receptor) (DFR) (DrmFMRFa-R)
Length = 549
Score = 43.9 bits (102), Expect = 6e-04
Identities = 30/120 (25%), Positives = 52/120 (43%)
Frame = +2
Query: 485 RNGTDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFF 664
R+ + LLT LA CD +II S+ + IP YY+ P P+
Sbjct: 144 RSSINYLLTGLARCDTVLIITSILLFGIPSIYPYTGHFFGYYNYVYPFISPAVFPIGMIA 203
Query: 665 QTLSSWILCLLLFERYLYQQHGKHAKLIFPFQTAIASLISFVVILFGFTILKFFEMTSIS 844
QT S ++ + ERY+ H A+ + + A I V + + +F+E+ +++
Sbjct: 204 QTASIYMTFTVTLERYVAVCHPLKARALCTYGRAKIYFIVCVCFSLAYNMPRFWEVLTVT 263
>sp|Q899T2|Y086_CLOTE Hypothetical UPF0182 protein CTC00086
Length = 887
Score = 35.4 bits (80), Expect = 0.20
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = +2
Query: 530 VAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFFQT------LSSWILC 691
+AIII L + T + Q + Y ++F+ F + F +S W+
Sbjct: 10 IAIIILLLILFLYRSTSFIIDFQWFQELSYTSVFLKEFFTIGKLFTLSFALIFISIWLYY 69
Query: 692 LLLFERYLYQQHGKHAKLIFPFQTAIASLIS-FVVILFGFTILKF 823
L L + +Q+H K KL+ F ++SL + F + + IL+F
Sbjct: 70 LSLKKNINWQEHNKRKKLMIAFNCIVSSLFAYFFSSKYWYQILQF 114
>sp|P49523|CCSA_ODOSI CYTOCHROME C BIOGENESIS PROTEIN CCSA
Length = 312
Score = 33.1 bits (74), Expect = 1.00
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = +3
Query: 99 YILIGKFKKMDADASQLDKLP-------FLEDALLLPTSEFDKIAKIKLMNGVKNWDVKV 257
+++I K++ +D LP + E L P+ E ++ K+KL+ + NW ++
Sbjct: 161 FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSYRI 220
Query: 258 V 260
+
Sbjct: 221 I 221
>sp|P56479|GALR1_MOUSE Galanin receptor type 1 (GAL1-R) (GALR1)
Length = 348
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +2
Query: 485 RNGTDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFF 664
R+ T++ + +L+I D+A ++F CIP+ + ++ FI YF +
Sbjct: 67 RSTTNLFILNLSIADLAYLLF-----CIPFQATVYALPTWVLGAFICKFIHYFFTVS--- 118
Query: 665 QTLSSWILCLLLFERYLYQQHGKHA 739
+S + L + +RY+ H + +
Sbjct: 119 MLVSIFTLAAMSVDRYVAIVHSRRS 143
>sp|P47211|GALR1_HUMAN Galanin receptor type 1 (GAL1-R) (GALR1)
Length = 349
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +2
Query: 485 RNGTDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFF 664
R+ T++ + +L+I D+A ++F CIP+ + ++ FI YF +
Sbjct: 67 RSTTNLFILNLSIADLAYLLF-----CIPFQATVYALPTWVLGAFICKFIHYFFTVS--- 118
Query: 665 QTLSSWILCLLLFERYLYQQHGKHA 739
+S + L + +RY+ H + +
Sbjct: 119 MLVSIFTLAAMSVDRYVAIVHSRRS 143
>sp|Q62805|GALR1_RAT Galanin receptor type 1 (GAL1-R) (GALR1)
Length = 346
Score = 32.7 bits (73), Expect = 1.3
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +2
Query: 485 RNGTDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFF 664
R+ T++ + +L+I D+A ++F CIP+ + ++ FI YF +
Sbjct: 66 RSTTNLFILNLSIADLAYLLF-----CIPFQATVYALPTWVLGAFICKFIHYFFTVS--- 117
Query: 665 QTLSSWILCLLLFERYLYQQHGKHA 739
+S + L + +RY+ H + +
Sbjct: 118 MLVSIFTLAAMSVDRYVAIVHSRRS 142
>sp|Q8K9L3|MVIN_BUCAP Virulence factor mviN homolog
Length = 514
Score = 32.0 bits (71), Expect = 2.2
Identities = 28/118 (23%), Positives = 54/118 (45%)
Frame = +2
Query: 494 TDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFFQTL 673
T ++LT+ I + + ++I +++ +++ Q S + + PY L F +L
Sbjct: 91 TILVLTTFVILGIIFSDYIIFISAPGFSESSKKLQ--LASNLLKIMFPYIL-----FISL 143
Query: 674 SSWILCLLLFERYLYQQHGKHAKLIFPFQTAIASLISFVVILFGFTILKFFEMTSISI 847
SS LC + Y Y F + +SL++ +I+F F +FE + IS+
Sbjct: 144 SS--LCSSILNSYNY----------FFIPSLSSSLLNISIIVFSFFFSDYFEPSIISL 189
>sp|Q25158|OPSC2_HEMSA Compound eye opsin BCRH2
Length = 377
Score = 31.2 bits (69), Expect = 3.8
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 485 RNGTDILLTSLAICDVAIIIFSLYIDCIPYTQKTREQQQYYYSKYVALFIPYFLPLQCFF 664
R +IL+ +LA+ D +I+ + + Y +S V +F P + +
Sbjct: 86 RTPANILVVNLALSD--LIMLTTNVPFFTYN---------CFSGGVWMFSPQYCEIYACL 134
Query: 665 QTL----SSWILCLLLFERYLYQQHGKHAKLIFPFQTAIASLISFVVILFGFTILKFF 826
+ S W+LC++ F+RY +G + + + + +LIS+V+ + G + FF
Sbjct: 135 GAITGVCSIWLLCMISFDRYNIICNGFNGPKLTTGKAVVFALISWVIAI-GCALPPFF 191
>sp|P36034|COS9_YEAST COS9 protein
Length = 407
Score = 30.8 bits (68), Expect = 5.0
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 102 ILIGKFKKMDADASQL----DKLPFLEDALLLPTSEFDKIAKIKLMNGVKNW 245
+L+ F ++S++ D +P++E+AL + ++EFDK K KL N K W
Sbjct: 186 VLLEPFSVKKDESSKIKSFGDSVPYIEEALQVYSTEFDK--KWKLFNTEKVW 235
Score = 30.0 bits (66), Expect = 8.4
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 575 TQKTREQQQYYYSKYVALFIPYFLPLQCFFQTLSSWILCLLLFERYLYQQHGKHAKLIFP 754
+QK Q + + +F +F +CF T +W+L LLL + K IFP
Sbjct: 46 SQKVVLPQDLFMDNFTWMFYEFF---KCF--TFRTWLLLLLLMWLPGFLSQIKSINRIFP 100
Query: 755 FQTAIASLISFVVILFGFTILKF 823
F+ I L+S +V +F I F
Sbjct: 101 FKLCI--LVSCLVGIFLPNIYSF 121
>sp|Q33078|MATK_SAXCE Maturase K (Intron maturase)
Length = 352
Score = 30.0 bits (66), Expect = 8.4
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Frame = +2
Query: 593 QQQYYYSKYVA-LFIPYFLPLQCFFQTLSSWI-----LCLLLFERYLYQQHGKHAKLIFP 754
+ + + YV+ + IPY + L+ QTL SW+ L LL F Y YQ LI P
Sbjct: 137 EDNFVHLNYVSDILIPYPIHLEIVVQTLRSWLKDASSLHLLRFLLYEYQNWN---SLIIP 193
Query: 755 FQTAIASLIS 784
+S++S
Sbjct: 194 TPKKPSSIVS 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,427,491
Number of Sequences: 369166
Number of extensions: 1848421
Number of successful extensions: 4659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4657
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)