Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G05
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 135 2e-32
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 122 3e-28
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 120 1e-27
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 117 6e-27
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 117 6e-27
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 117 8e-27
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 117 8e-27
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 116 1e-26
sp|P34728|ARF_CRYNE ADP-ribosylation factor 114 5e-26
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 113 1e-25
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 135 bits (341), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK
Sbjct: 119 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 178
Query: 183 NRSKK 197
NRSKK
Sbjct: 179 NRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 122 bits (305), Expect = 3e-28
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLP AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LK
Sbjct: 119 AVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178
Query: 183 NRS 191
NRS
Sbjct: 179 NRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 120 bits (301), Expect = 1e-27
Identities = 56/64 (87%), Positives = 60/64 (93%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLL+FANKQDLPNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LK
Sbjct: 119 AVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178
Query: 183 NRSK 194
N ++
Sbjct: 179 NANR 182
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 117 bits (294), Expect = 6e-27
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
A+LLVFANKQDLPNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LK
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178
Query: 183 NR 188
N+
Sbjct: 179 NQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 117 bits (294), Expect = 6e-27
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LK
Sbjct: 119 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLK 178
Query: 183 NR 188
N+
Sbjct: 179 NK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 117 bits (293), Expect = 8e-27
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+
Sbjct: 119 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 178
Query: 183 NR 188
N+
Sbjct: 179 NQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 117 bits (293), Expect = 8e-27
Identities = 55/62 (88%), Positives = 59/62 (95%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+
Sbjct: 119 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 178
Query: 183 NR 188
N+
Sbjct: 179 NQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 116 bits (291), Expect = 1e-26
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVF NKQDLPNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LK
Sbjct: 119 AVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLK 178
Query: 183 NR 188
N+
Sbjct: 179 NQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 114 bits (286), Expect = 5e-26
Identities = 54/63 (85%), Positives = 57/63 (90%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
A+LLVFANKQDLPNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK
Sbjct: 119 ALLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLK 178
Query: 183 NRS 191
+S
Sbjct: 179 RKS 181
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 113 bits (283), Expect = 1e-25
Identities = 53/63 (84%), Positives = 57/63 (90%)
Frame = +3
Query: 3 AVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 182
AVLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS L
Sbjct: 119 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLA 178
Query: 183 NRS 191
N++
Sbjct: 179 NKT 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,384,436
Number of Sequences: 369166
Number of extensions: 548293
Number of successful extensions: 1404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)