Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G02
(365 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57347|YA49_HAEIN Hypothetical protein HI1049 29 3.0
sp|Q9NYP8|CU062_HUMAN Putative protein C21orf62 (B37) 28 5.1
sp|Q8R1A4|DOCK7_MOUSE Dedicator of cytokinesis protein 7 28 5.1
sp|Q96HP0|DOCK6_HUMAN Dedicator of cytokinesis protein 6 28 6.6
sp|Q8VDR9|DOCK6_MOUSE Dedicator of cytokinesis protein 6 28 6.6
sp|Q6DT83|MATK_HOTPA Maturase K (Intron maturase) 28 8.6
>sp|Q57347|YA49_HAEIN Hypothetical protein HI1049
Length = 97
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 6/26 (23%)
Frame = +1
Query: 277 IYLYWIYFVVVV------TVAPWLLE 336
I LYWI F+V++ T+ PW+LE
Sbjct: 69 IVLYWIVFIVMIFFLTYPTILPWILE 94
>sp|Q9NYP8|CU062_HUMAN Putative protein C21orf62 (B37)
Length = 247
Score = 28.5 bits (62), Expect = 5.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +1
Query: 7 LNCRKMNRNHS---FTRENVIRDLFTVD*LFDCSVSVCETLCVSLFRHCDCVMSALCCHC 177
LNC + +S FTREN IR +CS C + R CD ++ L C+C
Sbjct: 20 LNCFTKGQKNSTLIFTRENTIR---------NCS-------CSADIRDCDYSLANLMCNC 63
Query: 178 R 180
+
Sbjct: 64 K 64
>sp|Q8R1A4|DOCK7_MOUSE Dedicator of cytokinesis protein 7
Length = 727
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 34 HSFTRENVIRDLFTVD*LFDCSVSVCETLCVSLFRHCDCVMSALCCH 174
H F + + F + LF+ C LC+ L RHC +S + H
Sbjct: 113 HCFATQRALVSKFP-ELLFEEETEQCADLCLRLLRHCSSSISTIRSH 158
>sp|Q96HP0|DOCK6_HUMAN Dedicator of cytokinesis protein 6
Length = 2047
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 85 LFDCSVSVCETLCVSLFRHCDCVMSALCCH 174
LF+ +C LC+ L RHC +S + H
Sbjct: 1451 LFEEDTELCADLCLRLLRHCGSRISTIRTH 1480
>sp|Q8VDR9|DOCK6_MOUSE Dedicator of cytokinesis protein 6
Length = 849
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 85 LFDCSVSVCETLCVSLFRHCDCVMSALCCH 174
LF+ +C LC+ L RHC +S + H
Sbjct: 253 LFEEDTELCADLCLRLLRHCGSRISTIRMH 282
>sp|Q6DT83|MATK_HOTPA Maturase K (Intron maturase)
Length = 509
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 77 TVNKSRITFSRVNE*FLFIFRQFNL 3
T KSR +FS+ N+ FLF F F++
Sbjct: 196 TPKKSRFSFSKQNKRFLFFFSNFHV 220
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,450,438
Number of Sequences: 369166
Number of extensions: 485708
Number of successful extensions: 1209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)