Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G01
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathe... 399 e-111
sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (... 394 e-109
sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RS... 385 e-107
sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [... 385 e-107
sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [... 372 e-103
sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase p... 351 2e-96
sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase p... 342 6e-94
sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6... 315 1e-85
sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5... 312 9e-85
sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precu... 307 2e-83
>sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathepsin B light chain; Cathepsin
B heavy chain]
Length = 335
Score = 399 bits (1025), Expect = e-111
Identities = 177/264 (67%), Positives = 205/264 (77%)
Frame = +2
Query: 11 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 190
KLP+R V LP +FDAR QWP C +I EIRDQ +CGSCWAFGAVEAI+DR CIHSN
Sbjct: 67 KLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSN 126
Query: 191 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 370
G +SAED+LTCCG CGDGCNGGFPSGAW++W GLV+GG Y +H+GC+ Y+ P
Sbjct: 127 GRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPP 186
Query: 371 CSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTN 550
C HHV G P CTGE TPKC K C+ GYS +Y EDK +G SSYSV +N++ IM EI N
Sbjct: 187 CEHHVNGSRPPCTGEGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKN 246
Query: 551 GPVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 730
GPVE AFSVY+DF YKSGVYQHV+G ++GGHAI+ILGWGVEN TPYWLV NSWN WGD
Sbjct: 247 GPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGD 306
Query: 731 NGYFKILRGSDECGIEDEVVAGIP 802
NG+FKILRG D CGIE E+VAG+P
Sbjct: 307 NGFFKILRGQDHCGIESEIVAGMP 330
>sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (APP secretase) (APPS)
[Contains: Cathepsin B light chain; Cathepsin B heavy
chain]
Length = 339
Score = 394 bits (1013), Expect = e-109
Identities = 175/264 (66%), Positives = 206/264 (78%)
Frame = +2
Query: 11 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 190
K P+R ++LP +FDAR QWP+C +I EIRDQ +CGSCWAFGAVEAI+DR CIH+N
Sbjct: 67 KPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 126
Query: 191 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 370
+ +SAEDLLTCCG CGDGCNGG+P+ AW++W GLV+GG Y +H+GC+ Y+ P
Sbjct: 127 AHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPP 186
Query: 371 CSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTN 550
C HHV G P CTGE TPKC K C+ GYS TY +DK YG +SYSV ++++ IM EI N
Sbjct: 187 CEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKN 246
Query: 551 GPVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 730
GPVE AFSVY+DF YKSGVYQHVTG M+GGHAI+ILGWGVEN TPYWLVANSWN WGD
Sbjct: 247 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 306
Query: 731 NGYFKILRGSDECGIEDEVVAGIP 802
NG+FKILRG D CGIE EVVAGIP
Sbjct: 307 NGFFKILRGQDHCGIESEVVAGIP 330
>sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RSG-2) [Contains: Cathepsin B
light chain; Cathepsin B heavy chain]
Length = 339
Score = 385 bits (990), Expect = e-107
Identities = 166/263 (63%), Positives = 200/263 (76%)
Frame = +2
Query: 14 LPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNG 193
LP+R + LP +FDAR QW C +I +IRDQ +CGSCWAFGAVEA++DR CIH+NG
Sbjct: 68 LPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNG 127
Query: 194 TQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKC 373
+SAEDLLTCCG +CGDGCNGG+PSGAW++W GLV+GG Y +H+GC Y P C
Sbjct: 128 RVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPC 187
Query: 374 SHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNG 553
HHV G P CTGE TPKC K C+AGYS +Y EDK YG +SYSV +++ IM EI NG
Sbjct: 188 EHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNG 247
Query: 554 PVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDN 733
PVE AF+V++DF YKSGVY+H G ++GGHAI+ILGWG+EN PYWLVANSWN WGDN
Sbjct: 248 PVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNVDWGDN 307
Query: 734 GYFKILRGSDECGIEDEVVAGIP 802
G+FKILRG + CGIE E+VAGIP
Sbjct: 308 GFFKILRGENHCGIESEIVAGIP 330
>sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 339
Score = 385 bits (990), Expect = e-107
Identities = 169/264 (64%), Positives = 200/264 (75%)
Frame = +2
Query: 11 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 190
KLP R + LP TFDAR QW C +IG+IRDQ +CGSCWAFGAVEAI+DR CIH+N
Sbjct: 67 KLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTN 126
Query: 191 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 370
G +SAEDLLTCCG +CGDGCNGG+PSGAW +W GLV+GG Y +H+GC Y P
Sbjct: 127 GRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPP 186
Query: 371 CSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTN 550
C HHV G P CTGE TP+C K+C+AGYS +Y EDK +G +SYSV ++ + IM EI N
Sbjct: 187 CEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKN 246
Query: 551 GPVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 730
GPVE AF+V++DF YKSGVY+H G M+GGHAI+ILGWGVEN PYWL ANSWN WGD
Sbjct: 247 GPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWNLDWGD 306
Query: 731 NGYFKILRGSDECGIEDEVVAGIP 802
NG+FKILRG + CGIE E+VAGIP
Sbjct: 307 NGFFKILRGENHCGIESEIVAGIP 330
>sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 340
Score = 372 bits (955), Expect = e-103
Identities = 165/265 (62%), Positives = 194/265 (73%), Gaps = 1/265 (0%)
Frame = +2
Query: 11 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 190
K P+R + LP TFD R QWP C +I EIRDQ +CGSCWAFGAVEAI+DR C+H+N
Sbjct: 67 KAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTN 126
Query: 191 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 370
+ +SAEDLL+CCGF CG GCNGG+PSGAW YW GLV+GG Y +H+GC+ Y P
Sbjct: 127 AKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIPP 186
Query: 371 CSHHVIGPYPNCTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILT 547
C HHV G P CTGE TP+C + C+ GYS +Y EDK YG +SY V +++ IM EI
Sbjct: 187 CEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYK 246
Query: 548 NGPVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWG 727
NGPVE AF VY DF YKSGVYQHV+G +GGHAI+ILGWGVEN TPYWL ANSWN WG
Sbjct: 247 NGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVENGTPYWLAANSWNTDWG 306
Query: 728 DNGYFKILRGSDECGIEDEVVAGIP 802
G+FKILRG D CGIE E+VAG+P
Sbjct: 307 ITGFFKILRGEDHCGIESEIVAGVP 331
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase precursor (Antigen Sj31)
Length = 342
Score = 351 bits (900), Expect = 2e-96
Identities = 153/253 (60%), Positives = 188/253 (74%), Gaps = 1/253 (0%)
Frame = +2
Query: 44 VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAED 223
V +P+ FD+R +WP CKSI +IRDQS CGSCWAFGAVEA+TDR CI S G Q+ +SA D
Sbjct: 88 VEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALD 147
Query: 224 LLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPN 403
L++CC CGDGC GGFP AW YWV G+VTGG H GCQ Y FPKC HH G YP
Sbjct: 148 LISCCK-DCGDGCQGGFPGVAWDYWVKRGIVTGGSKENHTGCQPYPFPKCEHHTKGKYPA 206
Query: 404 C-TGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVY 580
C T + TP+CK+ CQ GY Y +DK YG SY+V +N++ I ++I+ GPVEAAF VY
Sbjct: 207 CGTKIYKTPQCKQTCQKGYKTPYEQDKHYGDESYNVQNNEKVIQRDIMMYGPVEAAFDVY 266
Query: 581 ADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKILRGS 760
DF NYKSG+Y+HVTG ++GGHAI+I+GWGVE TPYWL+ANSWN WG+ G F+++RG
Sbjct: 267 EDFLNYKSGIYRHVTGSIVGGHAIRIIGWGVEKRTPYWLIANSWNEDWGEKGLFRMVRGR 326
Query: 761 DECGIEDEVVAGI 799
DEC IE +VVAG+
Sbjct: 327 DECSIESDVVAGL 339
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase precursor (Antigen Sm31)
Length = 340
Score = 342 bits (878), Expect = 6e-94
Identities = 153/264 (57%), Positives = 191/264 (72%), Gaps = 5/264 (1%)
Frame = +2
Query: 20 KRKPLLNR----VRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHS 187
KR+P ++ V +P+ FD+R +WP CKSI IRDQS CGSCW+FGAVEA++DR CI S
Sbjct: 75 KRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQS 134
Query: 188 NGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFP 367
G Q +SA DLLTCC CG GC GG AW YWV +G+VT H GC+ Y FP
Sbjct: 135 GGKQNVELSAVDLLTCCE-SCGLGCEGGILGPAWDYWVKEGIVTASSKENHTGCEPYPFP 193
Query: 368 KCSHHVIGPYPNCTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEIL 544
KC HH G YP C + + TP+CK+ CQ Y Y +DK GKSSY+V ++++AI +EI+
Sbjct: 194 KCEHHTKGKYPPCGSKIYNTPRCKQTCQRKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIM 253
Query: 545 TNGPVEAAFSVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTW 724
GPVEA+F+VY DF NYKSG+Y+H+TG LGGHAI+I+GWGVEN TPYWL+ANSWN W
Sbjct: 254 KYGPVEASFTVYEDFLNYKSGIYKHITGEALGGHAIRIIGWGVENKTPYWLIANSWNEDW 313
Query: 725 GDNGYFKILRGSDECGIEDEVVAG 796
G+NGYF+I+RG DEC IE EV+AG
Sbjct: 314 GENGYFRIVRGRDECSIESEVIAG 337
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine
protease-related 6)
Length = 379
Score = 315 bits (806), Expect = 1e-85
Identities = 144/256 (56%), Positives = 183/256 (71%), Gaps = 5/256 (1%)
Frame = +2
Query: 50 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 229
+P +FD+R WPKC SI IRDQS+CGSCWAFGAVEA++DR CI S+G +SA+DLL
Sbjct: 105 IPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLL 164
Query: 230 TCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHV----IGPY 397
+CC CG GCNGG P AW YWV DG+VTG Y A+ GC+ Y FP C HH P
Sbjct: 165 SCCK-SCGFGCNGGDPLAAWRYWVKDGIVTGSNYTANNGCKPYPFPPCEHHSKKTHFDPC 223
Query: 398 PNCTGEFPTPKCKKACQAGYS-KTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFS 574
P+ +PTPKC+K C + Y+ KTY+EDK +G S+Y V + +AI +E++T+GP+E AF
Sbjct: 224 PHDL--YPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAFE 281
Query: 575 VYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKILR 754
VY DF NY GVY H G + GGHA+K++GWG+++ PYW VANSWN WG++G+F+ILR
Sbjct: 282 VYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILR 341
Query: 755 GSDECGIEDEVVAGIP 802
G DECGIE VV GIP
Sbjct: 342 GVDECGIESGVVGGIP 357
>sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine
protease-related 5)
Length = 344
Score = 312 bits (799), Expect = 9e-85
Identities = 144/257 (56%), Positives = 175/257 (68%), Gaps = 6/257 (2%)
Frame = +2
Query: 50 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 229
+P FDAR QWP C SI IRDQS+CGSCWAF A EAI+DR CI SNG +S+EDLL
Sbjct: 82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLL 141
Query: 230 TCCG--FRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIG-PYP 400
+CC F CG+GC GG+P AW +WV GLVTGG Y GC+ Y+ C V G +P
Sbjct: 142 SCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWP 201
Query: 401 NCTGEF-PTPKCKKACQA--GYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAF 571
C + PTPKC +C + Y+ Y +DK +G ++Y+V + I EILTNGP+E AF
Sbjct: 202 ACPEDTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQIQTEILTNGPIEVAF 261
Query: 572 SVYADFPNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKIL 751
+VY DF Y +GVY H G LGGHA+KILGWGV+N TPYWLVANSWN WG+ GYF+I+
Sbjct: 262 TVYEDFYQYTTGVYVHTAGASLGGHAVKILGWGVDNGTPYWLVANSWNVAWGEKGYFRII 321
Query: 752 RGSDECGIEDEVVAGIP 802
RG +ECGIE VAGIP
Sbjct: 322 RGLNECGIEHSAVAGIP 338
>sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precursor
Length = 329
Score = 307 bits (787), Expect = 2e-83
Identities = 142/249 (57%), Positives = 173/249 (69%)
Frame = +2
Query: 50 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 229
+P TFD+R QW +CKSI IRDQ+ CGSCWAFGA E I+DR CI + G Q P IS +DLL
Sbjct: 85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLL 144
Query: 230 TCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCT 409
+CCG CG+GC GG+P A +W + G+VTGG+Y GC+ Y C+ NC
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHG-AGCKPYPIAPCTSG------NCP 197
Query: 410 GEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADF 589
E TP C +CQ+GYS YA+DK +G S+Y+V N +I EI NGPVEAAFSVY DF
Sbjct: 198 -ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDF 256
Query: 590 PNYKSGVYQHVTGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKILRGSDEC 769
YKSGVY+H G LGGHAIKI+GWG E+ +PYWLVANSW WG++G+FKI RG D+C
Sbjct: 257 YKYKSGVYKHTAGKYLGGHAIKIIGWGTESGSPYWLVANSWGVNWGESGFFKIYRGDDQC 316
Query: 770 GIEDEVVAG 796
GIE VVAG
Sbjct: 317 GIESAVVAG 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,479,519
Number of Sequences: 369166
Number of extensions: 2410206
Number of successful extensions: 7240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6995
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)