Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F20
(185 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30580|CHS2_AJEDE Chitin synthase 2 (Chitin-UDP acetyl-g... 29 2.9
sp|P23316|CHS1_CANAL Chitin synthase 1 (Chitin-UDP acetyl-g... 28 8.4
>sp|P30580|CHS2_AJEDE Chitin synthase 2 (Chitin-UDP acetyl-glucosaminyl transferase 2)
(Class-II chitin synthase 2)
Length = 189
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 12 LKTQLKFIMEEKNHKSWQVLFIMKEKNHK 98
L LKF EK +K Q++F +KE+N K
Sbjct: 88 LDPDLKFKGAEKGYKPCQIIFCLKERNEK 116
>sp|P23316|CHS1_CANAL Chitin synthase 1 (Chitin-UDP acetyl-glucosaminyl transferase 1)
Length = 776
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 24 LKFIMEEKNHKSWQVLFIMKEKNHK 98
LKF +EKN QVLF +KE N K
Sbjct: 190 LKFKGDEKNLAPVQVLFCLKESNQK 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,649,629
Number of Sequences: 369166
Number of extensions: 316899
Number of successful extensions: 666
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)