Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F19
(710 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6DKP5|WDR13_PANTR WD-repeat protein 13 >gi|20140804|sp|... 148 2e-35
sp|Q91V09|WD13_MOUSE WD-repeat protein 13 148 2e-35
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 42 0.001
sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID ... 41 0.003
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 40 0.005
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 40 0.005
sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4... 40 0.006
sp|O17468|HIRA_DROME HIRA protein homolog (dHIRA) 40 0.008
sp|P97260|SCAP_CRIGR Sterol regulatory element binding prot... 40 0.008
sp|O14727|APAF_HUMAN Apoptotic protease-activating factor 1... 39 0.010
>sp|Q6DKP5|WDR13_PANTR WD-repeat protein 13
sp|Q9H1Z4|WD13_HUMAN WD-repeat protein 13
Length = 485
Score = 148 bits (373), Expect = 2e-35
Identities = 74/148 (50%), Positives = 102/148 (68%)
Frame = +1
Query: 1 ITRAKRLTVSTKPCTISSLQSRAWINREARDPCLLVNASINSLLFFRIASSDGQIVLKNK 180
+T+AKRL V + ++S+ +R+W++REARDP LL+NA +N LL +R+ ++G + LK
Sbjct: 340 LTKAKRLVVH-EGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRS 398
Query: 181 FPIRHTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSG 360
FPI + + S FCPL+SFRQGACVVTGSED V FDV + K +N LQGHS
Sbjct: 399 FPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE----RAAKAAVNKLQGHSA 454
Query: 361 AVIDVAVSCDELVLASCDDKGHVILWKR 444
V+DV+ +CDE +LAS D G VI+W+R
Sbjct: 455 PVLDVSFNCDESLLASSDASGMVIVWRR 482
>sp|Q91V09|WD13_MOUSE WD-repeat protein 13
Length = 485
Score = 148 bits (373), Expect = 2e-35
Identities = 74/148 (50%), Positives = 102/148 (68%)
Frame = +1
Query: 1 ITRAKRLTVSTKPCTISSLQSRAWINREARDPCLLVNASINSLLFFRIASSDGQIVLKNK 180
+T+AKRL V + ++S+ +R+W++REARDP LL+NA +N LL +R+ ++G + LK
Sbjct: 340 LTKAKRLVVH-EGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGALQLKRS 398
Query: 181 FPIRHTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSG 360
FPI + + S FCPL+SFRQGACVVTGSED V FDV + K +N LQGHS
Sbjct: 399 FPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVE----RAAKAAVNKLQGHSA 454
Query: 361 AVIDVAVSCDELVLASCDDKGHVILWKR 444
V+DV+ +CDE +LAS D G VI+W+R
Sbjct: 455 PVLDVSFNCDESLLASSDASGMVIVWRR 482
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFRQ-GACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+S+ + F Q G + +GS+D V ++D+++GQ C+ +GH+ V V S
Sbjct: 905 HNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQ------CLKTFKGHTSRVRSVVFSP 958
Query: 388 DELVLASCDDKGHVILW 438
+ L+LAS V LW
Sbjct: 959 NSLMLASGSSDQTVRLW 975
Score = 42.4 bits (98), Expect = 0.001
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +1
Query: 247 GACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGH 426
GA + +GS+D V ++D+++G +C+ LQGH+ V V S D +LAS D
Sbjct: 1044 GAMLASGSDDQTVRLWDISSG------NCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQI 1097
Query: 427 VILW 438
V LW
Sbjct: 1098 VRLW 1101
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+++ I F G + +GS+D V ++++++G+ C+ L GH +V VA S
Sbjct: 1409 HNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGE------CLYTLHGHINSVRSVAFSS 1462
Query: 388 DELVLASCDDKGHVILW 438
D L+LAS D + LW
Sbjct: 1463 DGLILASGSDDETIKLW 1479
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+ + ++F G+ + TGS D V ++D+++ Q C + QGH+ V V S
Sbjct: 989 HTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ------CFYIFQGHTSCVRSVVFSS 1042
Query: 388 DELVLASCDDKGHVILW 438
D +LAS D V LW
Sbjct: 1043 DGAMLASGSDDQTVRLW 1059
Score = 39.3 bits (90), Expect = 0.010
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
HT ++ F P + +GS D V ++D+++G+ C+ + QGH+G V
Sbjct: 947 HTSRVRSVVFSP-----NSLMLASGSSDQTVRLWDISSGE------CLYIFQGHTGWVYS 995
Query: 373 VAVSCDELVLASCDDKGHVILW 438
VA + D +LA+ V LW
Sbjct: 996 VAFNLDGSMLATGSGDQTVRLW 1017
Score = 37.4 bits (85), Expect = 0.040
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Frame = +1
Query: 25 VSTKPCTISSLQSRAWINREARDP---CLLVNASINSLLFFRIASSDGQIVLKNKFPIRH 195
+++ C + +W+N +P L +S ++ + I+SS + H
Sbjct: 1229 INSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQG-----H 1283
Query: 196 TEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDV 375
T + +F P G+ + +GS D V ++++++ + C++ QGH+ V V
Sbjct: 1284 TNWVNSVAFNP-----DGSMLASGSGDQTVRLWEISSSK------CLHTFQGHTSWVSSV 1332
Query: 376 AVSCDELVLASCDDKGHVILW 438
S D +LAS D V LW
Sbjct: 1333 TFSPDGTMLASGSDDQTVRLW 1353
Score = 37.4 bits (85), Expect = 0.040
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 247 GACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGH 426
GA + +GS D V ++ +++G+ C+ LQGH+ V + S D +LAS D
Sbjct: 1380 GAILASGSGDQTVRLWSISSGK------CLYTLQGHNNWVGSIVFSPDGTLLASGSDDQT 1433
Query: 427 VILW 438
V LW
Sbjct: 1434 VRLW 1437
Score = 37.0 bits (84), Expect = 0.052
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+++ ++F GA + +GS D V ++D+++ + C+ +LQGH+ V V +
Sbjct: 1157 HTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSK------CLYILQGHTSWVNSVVFNP 1210
Query: 388 DELVLASCDDKGHVILWK 441
D LAS V LW+
Sbjct: 1211 DGSTLASGSSDQTVRLWE 1228
Score = 36.6 bits (83), Expect = 0.068
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+S+ + F G+ + +GS D V ++D+++ + C++ QGH+ V VA +
Sbjct: 1241 HTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSK------CLHTFQGHTNWVNSVAFNP 1294
Query: 388 DELVLASCDDKGHVILWK 441
D +LAS V LW+
Sbjct: 1295 DGSMLASGSGDQTVRLWE 1312
Score = 35.4 bits (80), Expect = 0.15
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = +1
Query: 229 LISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLAS 408
L+ G + GS D V ++D+ S K C+ LQGH+ V VA S D LAS
Sbjct: 1122 LVFSPNGVTLANGSSDQIVRLWDI------SSKKCLYTLQGHTNWVNAVAFSPDGATLAS 1175
Query: 409 CDDKGHVILW 438
V LW
Sbjct: 1176 GSGDQTVRLW 1185
Score = 34.7 bits (78), Expect = 0.26
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Frame = +1
Query: 25 VSTKPCTISSLQSRAWINREARDP---CLLVNASINSLLFFRIASSDGQIVLKNKFPIRH 195
+S+ C + W+N A +P L + ++ + I+SS + H
Sbjct: 1271 ISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQG-----H 1325
Query: 196 TEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDV 375
T + +F P G + +GS+D V ++ +++G+ C+ GH+ V V
Sbjct: 1326 TSWVSSVTFSP-----DGTMLASGSDDQTVRLWSISSGE------CLYTFLGHTNWVGSV 1374
Query: 376 AVSCDELVLASCDDKGHVILW 438
S D +LAS V LW
Sbjct: 1375 IFSPDGAILASGSGDQTVRLW 1395
Score = 29.6 bits (65), Expect = 8.3
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
HT + F P GA + +G +D V ++D+++G +C+ LQG++ V
Sbjct: 1073 HTSCVRSVVFSP-----DGAMLASGGDDQIVRLWDISSG------NCLYTLQGYTSWVRF 1121
Query: 373 VAVSCDELVLASCDDKGHVILW 438
+ S + + LA+ V LW
Sbjct: 1122 LVFSPNGVTLANGSSDQIVRLW 1143
>sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subunit 5 (Transcription
initiation factor TFIID 72 kDa subunit) (TAFII-72)
Length = 643
Score = 41.2 bits (95), Expect = 0.003
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H S ++F A V+TGS D ++DV G H + V GH+ V VA++
Sbjct: 462 HLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRG------HSVRVFNGHTQPVTAVAIAP 515
Query: 388 DELVLASCDDKGHVILW 438
D +AS D +G + LW
Sbjct: 516 DGHTMASADSEGLIHLW 532
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 40.4 bits (93), Expect = 0.005
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
HT+ + +F P GA + +GS+D V ++DV A + + V +GH+ V+D
Sbjct: 500 HTDWVRAVAFSP-----DGALLASGSDDATVRLWDVAAAEERA------VFEGHTHYVLD 548
Query: 373 VAVSCDELVLASCDDKGHVILW 438
+A S D ++AS G LW
Sbjct: 549 IAFSPDGSMVASGSRDGTARLW 570
Score = 40.4 bits (93), Expect = 0.005
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Frame = +1
Query: 70 WINREARDP--CLLVNASINSLL-FFRIASSDGQIVLKNKFPIRHTEKIIHSSFCPLISF 240
W+ A P LL + S ++ + + +A+++ + V + HT ++ +F P
Sbjct: 503 WVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEG-----HTHYVLDIAFSP---- 553
Query: 241 RQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDK 420
G+ V +GS DG +++V G ++ VL+GH+ V VA S D ++AS
Sbjct: 554 -DGSMVASGSRDGTARLWNVATGTEHA------VLKGHTDYVYAVAFSPDGSMVASGSRD 606
Query: 421 GHVILW 438
G + LW
Sbjct: 607 GTIRLW 612
Score = 38.9 bits (89), Expect = 0.014
Identities = 29/116 (25%), Positives = 56/116 (48%)
Frame = +1
Query: 91 DPCLLVNASINSLLFFRIASSDGQIVLKNKFPIRHTEKIIHSSFCPLISFRQGACVVTGS 270
D +LV+ S +++ + +AS + + HT+ + +F P GA + +GS
Sbjct: 638 DGSMLVHGSDSTVHLWDVASGEALHTFEG-----HTDWVRAVAFSP-----DGALLASGS 687
Query: 271 EDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGHVILW 438
+D + ++DV A + ++ L+GH+ V VA + LAS + G + +W
Sbjct: 688 DDRTIRLWDVAAQEEHT------TLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737
Score = 33.5 bits (75), Expect = 0.57
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +1
Query: 247 GACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGH 426
G+ + GS D + V+DV +G ++ L+GH+ V VA S D +LAS D
Sbjct: 471 GSLLAGGSGDKLIHVWDVASGDE------LHTLEGHTDWVRAVAFSPDGALLASGSDDAT 524
Query: 427 VILW 438
V LW
Sbjct: 525 VRLW 528
Score = 33.5 bits (75), Expect = 0.57
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +1
Query: 199 EKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVA 378
E ++ +F P G+ +V GS D V ++DV +G+ ++ +GH+ V VA
Sbjct: 628 ENVVSLAFSP-----DGSMLVHGS-DSTVHLWDVASGE------ALHTFEGHTDWVRAVA 675
Query: 379 VSCDELVLASCDDKGHVILW 438
S D +LAS D + LW
Sbjct: 676 FSPDGALLASGSDDRTIRLW 695
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 40.4 bits (93), Expect = 0.005
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 145 ASSDGQIVLKN-------KFPIRHTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVT 303
AS+D + L N + + HT+ + F P QG + TGS D V +++++
Sbjct: 996 ASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHP-----QGKIIATGSADCTVKLWNIS 1050
Query: 304 AGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGHVILW 438
GQ C+ L HS ++ +A S D +LAS V LW
Sbjct: 1051 TGQ------CLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089
Score = 38.5 bits (88), Expect = 0.018
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
H+ ++ + F P G + T S D V ++D G+ C+ L GH+ V D
Sbjct: 1103 HSNRVYSAIFSP-----NGEIIATCSTDQTVKIWDWQQGK------CLKTLTGHTNWVFD 1151
Query: 373 VAVSCDELVLASCDDKGHVILW 438
+A S D +LAS V +W
Sbjct: 1152 IAFSPDGKILASASHDQTVRIW 1173
Score = 37.4 bits (85), Expect = 0.040
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
H++KI+ ++ P G + + S D +V ++D G+ C+ +L+GHS V
Sbjct: 1061 HSDKILGMAWSP-----DGQLLASASADQSVRLWDCCTGR------CVGILRGHSNRVYS 1109
Query: 373 VAVSCDELVLASCDDKGHVILW 438
S + ++A+C V +W
Sbjct: 1110 AIFSPNGEIIATCSTDQTVKIW 1131
Score = 34.3 bits (77), Expect = 0.34
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 205 IIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVS 384
I+ ++F P +G + T D +V V++V +G+L + + +GHS V V S
Sbjct: 645 ILSAAFSP-----EGQLLATCDTDCHVRVWEVKSGKL------LLICRGHSNWVRFVVFS 693
Query: 385 CDELVLASCDDKGHVILW 438
D +LASC +V LW
Sbjct: 694 PDGEILASCGADENVKLW 711
Score = 33.5 bits (75), Expect = 0.57
Identities = 24/82 (29%), Positives = 36/82 (43%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
HT + +F P G + + S D V ++DV G+ C ++ GH+ V
Sbjct: 1145 HTNWVFDIAFSP-----DGKILASASHDQTVRIWDVNTGK------CHHICIGHTHLVSS 1193
Query: 373 VAVSCDELVLASCDDKGHVILW 438
VA S D V+AS V +W
Sbjct: 1194 VAFSPDGEVVASGSQDQTVRIW 1215
Score = 33.1 bits (74), Expect = 0.75
Identities = 22/82 (26%), Positives = 38/82 (46%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
HT+ + +F P G + + + D + ++DV+ G+ C+ L+ H+G V
Sbjct: 767 HTDWVRCVAFSP-----DGNTLASSAADHTIKLWDVSQGK------CLRTLKSHTGWVRS 815
Query: 373 VAVSCDELVLASCDDKGHVILW 438
VA S D LAS + +W
Sbjct: 816 VAFSADGQTLASGSGDRTIKIW 837
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 256 VVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGHVIL 435
+ +GS D V ++D G+ I+ L+GH+ + +A S D LAS V L
Sbjct: 951 LASGSNDKTVKLWDWQTGKY------ISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRL 1004
Query: 436 W 438
W
Sbjct: 1005 W 1005
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
H+ + ++F G + +GS D + +++ G+ C+ GH+ +V +A S
Sbjct: 809 HTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGE------CLKTYIGHTNSVYSIAYSP 862
Query: 388 DELVLASCDDKGHVILW 438
D +L S + LW
Sbjct: 863 DSKILVSGSGDRTIKLW 879
Score = 30.8 bits (68), Expect = 3.7
Identities = 24/84 (28%), Positives = 33/84 (39%)
Frame = +1
Query: 187 IRHTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAV 366
I HT + ++ P +V+GS D + ++D CI L GH+ V
Sbjct: 849 IGHTNSVYSIAYSP-----DSKILVSGSGDRTIKLWDCQT------HICIKTLHGHTNEV 897
Query: 367 IDVAVSCDELVLASCDDKGHVILW 438
VA S D LA V LW
Sbjct: 898 CSVAFSPDGQTLACVSLDQSVRLW 921
Score = 29.6 bits (65), Expect = 8.3
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 HSSFCPLISFR-QGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSC 387
HS++ + F G + + D NV ++ V G CI L GH V VA
Sbjct: 683 HSNWVRFVVFSPDGEILASCGADENVKLWSVRDGV------CIKTLTGHEHEVFSVAFHP 736
Query: 388 DELVLASCDDKGHVILW 438
D LAS + LW
Sbjct: 737 DGETLASASGDKTIKLW 753
>sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4 in chromosome III
Length = 376
Score = 40.0 bits (92), Expect = 0.006
Identities = 34/118 (28%), Positives = 51/118 (43%)
Frame = +1
Query: 97 CLLVNASINSLLFFRIASSDGQIVLKNKFPIRHTEKIIHSSFCPLISFRQGACVVTGSED 276
C++ + +L F I +S LK H + +F P Q + VV+GS D
Sbjct: 143 CVVSASDDKTLKIFEIVTSRMTKTLKG-----HNNYVFCCNFNP-----QSSLVVSGSFD 192
Query: 277 GNVLVFDVTAGQLNSPKHCINVLQGHSGAVIDVAVSCDELVLASCDDKGHVILWKRVN 450
+V ++DV G CI L HS V V+ + D ++AS G V +W N
Sbjct: 193 ESVRIWDVKTGM------CIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTAN 244
>sp|O17468|HIRA_DROME HIRA protein homolog (dHIRA)
Length = 1047
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Frame = +1
Query: 241 RQGACVVTGSEDGNVLVFDVTAG----------QLNSPK-HCINVLQGHSGAVIDVAVSC 387
+ G + +GS+D ++++ +AG Q N C L+GH G V+D+A S
Sbjct: 80 QNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDGDVLDLAWSP 139
Query: 388 DELVLASCDDKGHVILW 438
+++ LASC VI+W
Sbjct: 140 NDVYLASCSIDNTVIIW 156
>sp|P97260|SCAP_CRIGR Sterol regulatory element binding protein cleavage-activating protein
(SREBP cleavage-activating protein) (SCAP)
Length = 1276
Score = 39.7 bits (91), Expect = 0.008
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 187 IRHTEKIIHSSFCPLISFRQGAC-VVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGA 363
+ HT H P+ + R A +VTGS+D + VF + C+ LQGHSGA
Sbjct: 1067 LTHTVPCAHQK--PITALRAAAGRLVTGSQDHTLRVFRL------EDSCCLFTLQGHSGA 1118
Query: 364 VIDVAVSCDELVLASCDDKGHVILW 438
+ V + +VLAS G + LW
Sbjct: 1119 ITTVYID-QTMVLASGGQDGAICLW 1142
>sp|O14727|APAF_HUMAN Apoptotic protease-activating factor 1 (Apaf-1)
Length = 1248
Score = 39.3 bits (90), Expect = 0.010
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = +1
Query: 193 HTEKIIHSSFCPLISFRQGACVVTGSEDGNVLVFDVTAGQLNSPKHCINVLQGHSGAVID 372
H+E++ + C + + TGS D + ++D+ + K C N + GH+ +V
Sbjct: 698 HSEQV---NCCHFTNSSHHLLLATGSSDCFLKLWDL------NQKECRNTMFGHTNSVNH 748
Query: 373 VAVSCDELVLASCDDKGHVILWKRVNDDSNSEIN 474
S D+ +LASC G + LW + + IN
Sbjct: 749 CRFSPDDKLLASCSADGTLKLWDATSANERKSIN 782
Score = 33.1 bits (74), Expect = 0.75
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 334 INVLQGHSGAVIDVAVSCDELVLASCDDKGHVILWKRVNDD 456
++ L+GH+G V A S D +LA+ DD G + +W N +
Sbjct: 1120 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE 1160
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,723,968
Number of Sequences: 369166
Number of extensions: 1546655
Number of successful extensions: 4261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4234
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)