Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F13
(756 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 362 e-100
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 362 e-100
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 361 1e-99
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 358 7e-99
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 356 4e-98
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 355 6e-98
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 355 6e-98
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 355 6e-98
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 355 7e-98
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 355 7e-98
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 362 bits (929), Expect = e-100
Identities = 175/222 (78%), Positives = 198/222 (89%)
Frame = +1
Query: 1 KKEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 180
+++E SG +LL+AL PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGM
Sbjct: 217 ERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGM 276
Query: 181 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 360
VVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++
Sbjct: 277 VVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQE 336
Query: 361 ATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKS 540
A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKS 396
Query: 541 GDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
GDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 362 bits (928), Expect = e-100
Identities = 173/222 (77%), Positives = 200/222 (90%)
Frame = +1
Query: 1 KKEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 180
+++E +GKTLL+AL PP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM
Sbjct: 217 ERKEGTMTGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 276
Query: 181 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 360
+VTFAPQ LTTEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++
Sbjct: 277 IVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKE 336
Query: 361 ATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKS 540
F AQVIIMNHPG+I AGY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KS
Sbjct: 337 TKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKS 396
Query: 541 GDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
GDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 361 bits (926), Expect = 1e-99
Identities = 174/222 (78%), Positives = 198/222 (89%)
Frame = +1
Query: 1 KKEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 180
+++E SG +LL+AL PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGM
Sbjct: 217 ERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGM 276
Query: 181 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 360
VVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++
Sbjct: 277 VVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQE 336
Query: 361 ATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKS 540
A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKS 396
Query: 541 GDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
GDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 358 bits (920), Expect = 7e-99
Identities = 174/222 (78%), Positives = 194/222 (87%)
Frame = +1
Query: 1 KKEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 180
+++E SG TLL+AL PP RPTNKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM
Sbjct: 217 ERKEGNASGITLLEALDCIIPPQRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM 276
Query: 181 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 360
+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP Q
Sbjct: 277 IVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQ 336
Query: 361 ATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKS 540
A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KS
Sbjct: 337 AGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKS 396
Query: 541 GDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
GDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 356 bits (913), Expect = 4e-98
Identities = 171/220 (77%), Positives = 194/220 (88%)
Frame = +1
Query: 7 EEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVV 186
+E K +GKTLL+A+ PPTRP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVV
Sbjct: 217 KEGKATGKTLLEAIDAVDPPTRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVV 276
Query: 187 TFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQAT 366
TFAP G+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVKEIRRGNV DSK+DP +
Sbjct: 277 TFAPAGVTTEVKSVEMHHEQLPEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCD 336
Query: 367 DFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGD 546
F AQVII NHPG+I AGYSPVLDCHTAHIAC+F EL++KIDRRSGK +ED PK K+GD
Sbjct: 337 SFTAQVIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGD 396
Query: 547 AGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
A +VR++PSKPMCVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 397 AAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 355 bits (912), Expect = 6e-98
Identities = 173/221 (78%), Positives = 195/221 (88%)
Frame = +1
Query: 4 KEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMV 183
+++ SG TLL+AL PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMV
Sbjct: 218 RKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMV 277
Query: 184 VTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQA 363
VTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337
Query: 364 TDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSG 543
F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSG
Sbjct: 338 AGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSG 397
Query: 544 DAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
DA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 398 DAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 355 bits (912), Expect = 6e-98
Identities = 173/221 (78%), Positives = 195/221 (88%)
Frame = +1
Query: 4 KEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMV 183
+++ SG TLL+AL PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMV
Sbjct: 218 RKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMV 277
Query: 184 VTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQA 363
VTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337
Query: 364 TDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSG 543
F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSG
Sbjct: 338 AGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSG 397
Query: 544 DAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
DA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 398 DAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 355 bits (912), Expect = 6e-98
Identities = 168/215 (78%), Positives = 194/215 (90%)
Frame = +1
Query: 22 SGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 201
SGKTLLDA+ PP RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP
Sbjct: 222 SGKTLLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPA 281
Query: 202 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 381
+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQ
Sbjct: 282 NVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQ 341
Query: 382 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 561
VI++NHPG+I AGY+PVLDCHTAHIACKFAEL++KIDRRSGK LED PK KSGD+ +V+
Sbjct: 342 VIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVK 401
Query: 562 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 MIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 355 bits (911), Expect = 7e-98
Identities = 172/221 (77%), Positives = 195/221 (88%)
Frame = +1
Query: 4 KEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMV 183
+++ SG TLL+AL PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMV
Sbjct: 218 RKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMV 277
Query: 184 VTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQA 363
VTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337
Query: 364 TDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSG 543
F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSG
Sbjct: 338 AGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSG 397
Query: 544 DAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
DA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 398 DAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 355 bits (911), Expect = 7e-98
Identities = 170/222 (76%), Positives = 199/222 (89%)
Frame = +1
Query: 1 KKEEIKTSGKTLLDALVL*GPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM 180
+++E SGKTLL+AL PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGM
Sbjct: 217 ERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGM 276
Query: 181 VVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQ 360
VVTFAPQ +TTEVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++
Sbjct: 277 VVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKE 336
Query: 361 ATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKS 540
A F AQVIIMNHPG+I GY+PVLDCHTAHIACKF EL +K+DRR+GK +EDFPK KS
Sbjct: 337 ARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKS 396
Query: 541 GDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 666
GDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 397 GDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,760,932
Number of Sequences: 369166
Number of extensions: 1807164
Number of successful extensions: 5692
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5398
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)