Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F06
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K3W3|CASC3_MOUSE Cancer susceptibility candidate gene ... 40 0.004
sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid pro... 38 0.013
sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 37 0.022
sp|O13772|YE9A_SCHPO Hypothetical proline/serine-rich prote... 37 0.022
sp|Q8K3X0|CASC3_RAT Cancer susceptibility candidate gene 3 ... 37 0.037
sp|Q8FJC7|FTSK_ECOL6 DNA translocase ftsK 37 0.037
sp|Q12034|SLF1_YEAST SLF1 protein 36 0.064
sp|Q9QZA2|PDC6I_RAT Programmed cell death 6-interacting pro... 35 0.083
sp|Q25514|HUNB_MANSE Hunchback protein 35 0.11
sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3 35 0.11
>sp|Q8K3W3|CASC3_MOUSE Cancer susceptibility candidate gene 3 protein (Metastatic lymph
node protein 51) (MLN 51 protein) (Barentsz protein)
(Btz)
Length = 697
Score = 39.7 bits (91), Expect = 0.004
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +1
Query: 220 DMPPPSQPIG-IHQDKNQMQYPGNQRIMYPGVAPNYNQYNPHFDQNSKFYPPQNMYQQSP 396
D P P P G I Q + + +PG PG PN Y P + PPQ + +
Sbjct: 557 DSPAPLPPQGMIVQPEMHLPHPGLHPHQSPGPLPNPGLYPPPVSMSPGQPPPQQLLAPTY 616
Query: 397 YNYQGMYN------PYQPVAPPAAPSH 459
++ G+ N PY P A P P H
Sbjct: 617 FSAPGVMNFGNPNYPYAPGALPPPPPH 643
>sp|Q8IN94|OSA_DROME Trithorax group protein osa (Eyelid protein)
Length = 2716
Score = 38.1 bits (87), Expect = 0.013
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Frame = +1
Query: 154 QKFEEAVSTASSHVQNTSNIKTDMPPPSQPIGIHQDKNQMQYP--------GNQRIMYPG 309
Q+ + AS+ + SN PPP+ P +Q N M P G M P
Sbjct: 573 QQQQSQQQQASNSASSASNSPQQTPPPAPPP--NQGMNNMATPPPPPQGAAGGGYPMPPH 630
Query: 310 VAPNYNQYNPHFDQNSKFYPPQNMYQQSPYNYQGMYNPYQPVAPPAA 450
+ Y P ++ YPPQ Q P NY P +P PP A
Sbjct: 631 MHGGYKMGGPGQSPGAQGYPPQQPQQYPPGNY-----PPRPQYPPGA 672
Score = 30.0 bits (66), Expect = 3.5
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Frame = +1
Query: 229 PPSQPIGIHQDKNQMQYPGNQRIMYPGVAP-------NYNQYNPHFDQNSKFYPPQNMYQ 387
PP QP G + QYP R MYP P NQY P+ + PP
Sbjct: 1382 PPGQPFG----QGPGQYPPQNRNMYPPYGPEGEAPPTGANQYGPYGSRPYSQPPPGGPQP 1437
Query: 388 QSPYNYQGMYNPYQPVAPPAA 450
+ G P APP++
Sbjct: 1438 PTQTVAGGPPAGGAPGAPPSS 1458
Score = 28.9 bits (63), Expect = 7.8
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Frame = +1
Query: 280 PGNQRIMYPGVAPNY---NQYNPH------FDQNSKFYPPQNMYQQSPYNYQGMYNPYQP 432
PG+ PG Y +QYN F Q YPPQN PY +G
Sbjct: 1357 PGSPYPSQPGAYGQYGSSDQYNATGPPGQPFGQGPGQYPPQNRNMYPPYGPEG------- 1409
Query: 433 VAPPAAPSHYNQH 471
APP + Y +
Sbjct: 1410 EAPPTGANQYGPY 1422
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
Length = 1563
Score = 37.4 bits (85), Expect = 0.022
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 220 DMPPPSQPIGIHQDK-NQMQYPGNQRIMYPGVAPNYNQYNPHF---DQNSKFYPPQNMYQ 387
++P P Q DK N Y NQ+ G+ PN+NQ +F +QNS +P QN
Sbjct: 156 NVPEPQQRRAEPPDKMNTPNYQNNQQPRGMGMQPNHNQTQQNFMNQNQNSNQHPNQN--- 212
Query: 388 QSPYNYQGMYNPYQ 429
+N M NP+Q
Sbjct: 213 ---HNQNQMQNPHQ 223
>sp|O13772|YE9A_SCHPO Hypothetical proline/serine-rich protein C17A5.10 in chromosome I
Length = 224
Score = 37.4 bits (85), Expect = 0.022
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Frame = +1
Query: 22 VREPNQQIIVHKNVDIDKESCAVSQNSDLSKDISQNVVNNSEYVQKFEEAVSTASSHVQN 201
V P+ + ++ + ID + + Q S + S + Y + +SS
Sbjct: 6 VPPPSYEEVLRQEGVIDSPNSSNGQTSTSAGHPSSSSSTLPNYAASSLNSRPVSSS---G 62
Query: 202 TSNIKTDMP-PPSQPIGIHQDKNQMQYPGNQRIMYPGVAP--NYNQYNPHFDQNSKFYP- 369
+ N + P PP++P Q N Q PGN MY P NYN P + Q S+FY
Sbjct: 63 SGNAYSQAPYPPARPTS--QRPNSWQ-PGNASTMYASPPPSSNYNTAKPPY-QTSQFYAR 118
Query: 370 PQNMYQQSPYNYQGMYNPYQP 432
PQ+ Y P + PY P
Sbjct: 119 PQSSYAPPPSGRPRISYPYPP 139
>sp|Q8K3X0|CASC3_RAT Cancer susceptibility candidate gene 3 protein (Metastatic lymph
node protein 51) (MLN 51 protein) (Barentsz protein)
(Btz)
Length = 699
Score = 36.6 bits (83), Expect = 0.037
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = +1
Query: 220 DMPPPSQPIG-IHQDKNQMQYPGNQRIMYPGVAPNYNQYNPHFDQNSKFYPPQNMYQQSP 396
D P P P G I Q + + +PG P PN Y P + PPQ + +
Sbjct: 558 DSPAPLPPQGMIVQPEMHLPHPGLHPHQSPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTY 617
Query: 397 YNYQGMYN------PYQPVA-PPAAPSH 459
++ G+ N PY P A PP P H
Sbjct: 618 FSAPGVMNFGNPSYPYAPGALPPPPPPH 645
>sp|Q8FJC7|FTSK_ECOL6 DNA translocase ftsK
Length = 1347
Score = 36.6 bits (83), Expect = 0.037
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Frame = +1
Query: 232 PSQPIGIHQDKNQMQYPGNQRIMYPG----VAPNYNQYNPHFDQNSKFYPPQNMYQ--QS 393
P QP+ Q Q Q P + Y VAP P + Q + PQ YQ Q
Sbjct: 755 PQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQYQQPQQPVAPQQQYQQPQQ 814
Query: 394 PYNYQGMY-NPYQPVAP 441
P Q Y P QPV P
Sbjct: 815 PVTQQPQYQQPQQPVVP 831
>sp|Q12034|SLF1_YEAST SLF1 protein
Length = 447
Score = 35.8 bits (81), Expect = 0.064
Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 3/150 (2%)
Frame = +1
Query: 43 IIVHKNVDIDKESCAVSQNSDLSKDISQNVVNNSEYVQKFEEAVSTASSHVQNTSNIKTD 222
+I+ + D + +S S+NS +K + + N++ +K + ++S + N SN+++
Sbjct: 86 VIISGSKDTNSKSGKNSKNSKTNKKMKKRGKYNNDINKKDFNGQTNSTSEISNVSNLESK 145
Query: 223 MPPPSQPIGIHQDKNQMQYPGNQRIMYPGVAPNYNQYNPHFDQNSKF-YPPQNMYQQSPY 399
+ + IH +RI + N Q + ++N K Y + + Q+
Sbjct: 146 PLDANAKVNIHSSSGATANGNIKRITNNNNSTNGRQSRNYQNRNGKTRYNNNSRHSQAAN 205
Query: 400 NYQGMYNPYQ--PVAPPAAPSHYNQHMMNA 483
N N YQ P P A N + N+
Sbjct: 206 NAISFPNNYQARPEYIPNASHWLNNNSRNS 235
>sp|Q9QZA2|PDC6I_RAT Programmed cell death 6-interacting protein (ALG-2 interacting
protein 1)
Length = 401
Score = 35.4 bits (80), Expect = 0.083
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +1
Query: 169 AVSTASSHVQNTSNIKTDMPPPSQPIGIHQDKNQMQYPGNQRIMYPGVA--PNYNQYNPH 342
A +TA + V T++ P S P Q YPG YPG P YNP+
Sbjct: 304 AAATAPAGV-GTASAAPPQTPGSAPPPQAQGPPYPTYPG-----YPGYCQMPMPMGYNPY 357
Query: 343 -FDQNSKFYPPQNMYQQSPYN--YQGMYNPYQPVAPPAAPSHYNQ 468
+ Q + YPP +Y QSP Y G P P P S+Y Q
Sbjct: 358 TYGQYNMPYPP--VYHQSPGQAPYPGPQQPTYPFPQPPQQSYYPQ 400
>sp|Q25514|HUNB_MANSE Hunchback protein
Length = 327
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 238 QPIGIHQDKNQMQYPGNQRIMYPGVAPNYNQYNPHFDQNSKFYPPQNMYQQ--SPYNYQG 411
+P G + NQ Q P ++ P Y P +S +PP N Y+Q SP N++
Sbjct: 100 EPQGPVSNNNQPQPPAPTHPIFGNHFPVNLPYLPPLLPHSFLFPPNNNYEQRTSPKNHEI 159
Query: 412 MYNPYQPVAPPAAPSH 459
Q ++PPA+ H
Sbjct: 160 QTEKPQQMSPPASILH 175
>sp|Q8BUR3|FOXJ3_MOUSE Forkhead box protein J3
Length = 623
Score = 35.0 bits (79), Expect = 0.11
Identities = 35/122 (28%), Positives = 49/122 (40%)
Frame = +1
Query: 79 SCAVSQNSDLSKDISQNVVNNSEYVQKFEEAVSTASSHVQNTSNIKTDMPPPSQPIGIHQ 258
SC+ Q+S S S N S +T S+ V S M P P H+
Sbjct: 329 SCSY-QHSPSSTVTSHPHSNQSSLPNNHSGLSATGSNSVAQVSLSHPQMHPQPSPHTPHR 387
Query: 259 DKNQMQYPGNQRIMYPGVAPNYNQYNPHFDQNSKFYPPQNMYQQSPYNYQGMYNPYQPVA 438
Q+P QR +P AP+ Q++ +S+ PP Q P N+Q +QP
Sbjct: 388 PHGLPQHP--QRPQHP--APHPQQHSQLQPPHSQHPPPHQHIQHHP-NHQHQTLAHQPPP 442
Query: 439 PP 444
PP
Sbjct: 443 PP 444
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,178,201
Number of Sequences: 369166
Number of extensions: 1169211
Number of successful extensions: 3414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3339
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)