Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E24
(228 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30321|DPOL_PBCV1 DNA polymerase 30 1.3
sp|P33817|VP4A_VARV Major core protein P4a precursor (Virio... 28 4.9
sp|P19812|UBR1_YEAST Ubiquitin-protein ligase E3 component ... 28 8.4
>sp|P30321|DPOL_PBCV1 DNA polymerase
Length = 913
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 26 RKDTVDITRDTLVITRDMLVIIKDTLAIIKDTLVIIRKXXXXXXXXXXFIENFMIDALL 202
R+D ITRD L + D ++ KDT + +TL IRK +E FM+ LL
Sbjct: 721 RRDFSPITRDILKESLDTILYKKDTPTAVSETLERIRKVLDNEYP----MEKFMMSKLL 775
>sp|P33817|VP4A_VARV Major core protein P4a precursor (Virion core protein P4a)
[Contains: Core protein P4a; 9 kDa peptide (9K); 23 kDa
protein (23K)]
Length = 892
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 154 LFSNCFSNDDQRV--FYDGQRVFYDDQHVS-CDDQRVSCDVHRVFSFF 20
++ F +D RV +Y+G RV +DD+ ++ C R + R+ FF
Sbjct: 260 MYEQYFVDDYDRVPIYYNGNRVIFDDEIINFCISMRYQSLIPRLVEFF 307
>sp|P19812|UBR1_YEAST Ubiquitin-protein ligase E3 component N-recognin-1 (N-end-recognizing
protein)
Length = 1950
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 181 IFNKSKF*NLFSNCFSNDDQRVFYDGQRVFYDDQHVSCDDQR--VSCDVHRVFSFFLRQI 8
IFN ++F ++ +++D+++ + D + ++ SC ++ VSC+ H + F R +
Sbjct: 1249 IFNPNEFMPMWDGFYNDDEKQAYIDDDVLEALKENGSCGSRKVFVSCNHHIHHNCFKRYV 1308
Query: 7 PK 2
K
Sbjct: 1309 QK 1310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,302,589
Number of Sequences: 369166
Number of extensions: 195664
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1670828180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)